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Sequence Retreival for Multiple Sequence Alignment #71

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josiahseaman opened this issue Dec 4, 2018 · 1 comment
Closed

Sequence Retreival for Multiple Sequence Alignment #71

josiahseaman opened this issue Dec 4, 2018 · 1 comment
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#41 #62 Multiple files, one contig per line, 0 pixel titles. Fetch file directory and contig from /chunks/.
Display the protein sequence under the cursor.
@josiahseaman josiahseaman self-assigned this Dec 4, 2018
josiahseaman added a commit that referenced this issue Dec 4, 2018
@josiahseaman
#71 WIP: Moved set_column_height to base class
6cb2ecf
josiahseaman added a commit that referenced this issue Dec 4, 2018
@josiahseaman
#71 Whole Genome Alignment sequence retrieval confirmed working.
018b280
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image

josiahseaman added a commit that referenced this issue Dec 4, 2018
@josiahseaman
#71 Whole Genome Alignment: showing filename under cursor
4cf9d08
josiahseaman added a commit that referenced this issue Dec 10, 2018
@josiahseaman
#71 Whole Genome Alignment: showing filename under cursor
bfddbf1
josiahseaman added a commit that referenced this issue Dec 10, 2018
@josiahseaman
#71 WIP: Retrieval working alongside collapse_file_to_one_contig()
a9176fb
josiahseaman added a commit that referenced this issue Dec 10, 2018
@josiahseaman
#71 MSA Multi-file layout working properly. No titles.
10298c9
josiahseaman added a commit that referenced this issue Dec 10, 2018
@josiahseaman
#71 Titles working on MSA
97ab818
josiahseaman added a commit that referenced this issue Dec 10, 2018
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#71 Further improvements and code cleanup. --sort_contigs for MSA, ne…
f6e2414 
…ver over runs image dimensions. Added whole genome alignment example files.
@josiahseaman josiahseaman added this to the Publication milestone Dec 12, 2018
josiahseaman added a commit that referenced this issue Dec 17, 2018
@josiahseaman
#71 Version bump 2.4.2. Finished new sequence mouse over functionalit…
7b013db 
…y and dynamic color legend.
josiahseaman added a commit that referenced this issue Dec 17, 2018
@josiahseaman
#71 Equivalent functionality with new gff3 parser by Uli Kohler
693d4ec
josiahseaman added a commit that referenced this issue Dec 17, 2018
@josiahseaman
#71 Merged GFF3 as a subclass of GFF.Annotation and added name() id()…
890a0bf 
… and parent() methods to the interface
josiahseaman added a commit that referenced this issue Dec 17, 2018
@josiahseaman
#71 Moved GFF3 to Annotations.py
2d3dc6f
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