Merge pull request #112 from bgyori/grounding_curation

Add groundings and new families from kinase curation

entities.csv

@@ -71,6 +71,7 @@ BDKR
 BEST
 Beta_3_4_GTF
 BIRC
+BLVR
 BMP
 BMP_receptor
 BMP_receptor_type_I
@@ -117,12 +118,14 @@ Chemokine_receptor
 Chloride_calcium_activated_channels
 Chloride_channels
 Cholinesterase
+CHK
 CHRM
 CHRN
 CK2
 Clathrin
 CLCN
 CLIC
+CLK
 CNG
 CNKSR
 Cofilin
@@ -149,14 +152,17 @@ CTNNA
 CUL
 CXCL_ELR_negative
 CXCL_ELR_positive
+Creatine_kinase
 Cyclin
 Cyclin_A
 Cyclin_D
 Cyclin_E
 Cyclophilin
 Cytoplasmic_dynein
+DAPK
 DDR
 Death_receptor
+Deoxyribonucleoside_kinases
 Desmoglein
 DGC
 DGK
@@ -169,6 +175,7 @@ DYRK
 E2F
 E3_Ub_ligase
 EDN
+EFN
 EGFR_ligand
 EGR
 EIF2B
@@ -180,6 +187,8 @@ EIF4G
 ELA
 ENO
 Eotaxin
+EPHA
+EPHB
 Ephrin_receptor
 EPN
 ERBB
@@ -192,6 +201,7 @@ ETC_complex_III
 ETC_complex_I_supernumerary
 ETC_complex_IV
 ETC_complex_V
+ETNK
 ETS
 EXOC
 EXT
@@ -335,13 +345,15 @@ MAP2K
 MAP3K
 MAPK
 MCM
+MED
 MEF2
 MEK
 Metallothionein
 MGAT
 Mitochondrial_Ribosome
 MKNK
 MMP
+MOB
 MRPL
 MRPS
 mTORC1
@@ -369,6 +381,7 @@ NCOA
 NCOR
 NDRG
 Neurexins
+Neuropeptides
 NFAT
 NFE
 NFkappaB
@@ -444,6 +457,7 @@ Phosphatase
 PI3K
 PI3K_p110
 PI3K_p85
+PI4K
 PIK3R_I
 PIM
 PKA
@@ -503,6 +517,7 @@ RFX
 RGL
 RHO
 RhoGDI
+RIPK
 RLR
 RNApo_I
 RNApo_II
@@ -511,6 +526,9 @@ ROCK
 ROR
 RPA
 RSK
+RSTK
+RSTK1
+RSTK2
 RTK
 RXR
 RYR
@@ -544,6 +562,7 @@ Sodium_channels
 Sodium_voltage_gated_channel_alpha_subunits
 Sodium_voltage_gated_channel_beta_subunits
 SOS
+SPHK
 SPRED
 SPRY
 SRC
@@ -553,8 +572,10 @@ STAT5
 STT3
 Sulfonylurea_receptor
 SWI_SNF
+TAC
 TAOK
 TAP
+TAT_associated_kinase
 TCF_LEF
 TCR
 TEAD
@@ -567,10 +588,12 @@ THR
 Thrombin_antithrombin
 TIAM
 TIF_IB
+TK
 TLR
 TN
 TNF
 TNFRSF
+TOP
 TOP2
 TPCN
 Troponin

equivalences.csv

@@ -489,6 +489,8 @@ HGNC_GROUP,305,AQP
 HGNC_GROUP,306,VDAC
 HGNC_GROUP,307,CLIC
 HGNC_GROUP,314,GJ
+HGNC_GROUP,480,CLK
+HGNC_GROUP,546,EFN
 HGNC_GROUP,563,GABR
 HGNC_GROUP,581,Augmin
 HGNC_GROUP,622,Kinesin
@@ -497,11 +499,14 @@ HGNC_GROUP,641,ETC_complex_II
 HGNC_GROUP,642,ETC_complex_III
 HGNC_GROUP,643,ETC_complex_IV
 HGNC_GROUP,644,ETC_complex_V
+HGNC_GROUP,647,MOB
 HGNC_GROUP,854,Neuropeptide_receptor
 HGNC_GROUP,856,KCNT
 HGNC_GROUP,865,ANO
 HGNC_GROUP,866,BEST
 HGNC_GROUP,868,GLRA_GLRB
+HGNC_GROUP,1021,DAPK
+HGNC_GROUP,1050,TOP
 HGNC_GROUP,1149,ETC_complex_I_core
 HGNC_GROUP,1150,ETC_complex_I_supernumerary
 HGNC_GROUP,1158,LRRC8
@@ -514,6 +519,10 @@ HGNC_GROUP,1511,CACNG
 HGNC_GROUP,1512,CACNA1
 HGNC_GROUP,1514,CACNA2D
 HGNC_GROUP,1515,CACNB
+HGNC_GROUP,1699,Deoxyribonucleoside_kinases
+HGNC_GROUP,1901,TAC
+HGNC_GROUP,1902,Neuropeptides
+HGNC_GROUP,1908,EDN
 IP,IPR000074,Apolipoprotein
 IP,IPR000096,SAA
 IP,IPR000162,GRM

export/famplex.belns

@@ -2,8 +2,8 @@
 Keyword=FPLX
 NameString=FamPlex
 DomainString=Gene and Gene Products
-VersionString=20200121
-CreatedDateTime=2020-01-21T09:07:57
+VersionString=20200123
+CreatedDateTime=2020-01-23T22:36:43
 DescriptionString=FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.
 QueryValueURL=http://identifiers.org/fplx/
 
@@ -93,6 +93,7 @@ BCKDC|CGPR
 BDKR|CGPR
 BEST|CGPR
 BIRC|CGPR
+BLVR|CGPR
 BMP|CGPR
 BMP_receptor|CGPR
 BMP_receptor_type_I|CGPR
@@ -129,11 +130,13 @@ CDKN1|CGPR
 CDKN2|CGPR
 CEBP|CGPR
 CHEK|CGPR
+CHK|CGPR
 CHRM|CGPR
 CHRN|CGPR
 CK2|CGPR
 CLCN|CGPR
 CLIC|CGPR
+CLK|CGPR
 CNG|CGPR
 CNKSR|CGPR
 COL1|CGPR
@@ -172,12 +175,14 @@ Cholinesterase|CGPR
 Clathrin|CGPR
 Cofilin|CGPR
 Cohesin|CGPR
+Creatine_kinase|CGPR
 Cyclin|CGPR
 Cyclin_A|CGPR
 Cyclin_D|CGPR
 Cyclin_E|CGPR
 Cyclophilin|CGPR
 Cytoplasmic_dynein|CGPR
+DAPK|CGPR
 DDR|CGPR
 DGC|CGPR
 DGK|CGPR
@@ -188,10 +193,12 @@ DUSP|CGPR
 DVL|CGPR
 DYRK|CGPR
 Death_receptor|CGPR
+Deoxyribonucleoside_kinases|CGPR
 Desmoglein|CGPR
 E2F|CGPR
 E3_Ub_ligase|CGPR
 EDN|CGPR
+EFN|CGPR
 EGFR_ligand|CGPR
 EGR|CGPR
 EIF2B|CGPR
@@ -202,6 +209,8 @@ EIF4EBP|CGPR
 EIF4G|CGPR
 ELA|CGPR
 ENO|CGPR
+EPHA|CGPR
+EPHB|CGPR
 EPN|CGPR
 ERBB|CGPR
 ERK|CGPR
@@ -213,6 +222,7 @@ ETC_complex_IV|CGPR
 ETC_complex_I_core|CGPR
 ETC_complex_I_supernumerary|CGPR
 ETC_complex_V|CGPR
+ETNK|CGPR
 ETS|CGPR
 EXOC|CGPR
 EXT|CGPR
@@ -356,11 +366,13 @@ MAP2K|CGPR
 MAP3K|CGPR
 MAPK|CGPR
 MCM|CGPR
+MED|CGPR
 MEF2|CGPR
 MEK|CGPR
 MGAT|CGPR
 MKNK|CGPR
 MMP|CGPR
+MOB|CGPR
 MRPL|CGPR
 MRPS|CGPR
 MYH|CGPR
@@ -405,6 +417,7 @@ Na_K_ATPase|CGPR
 Natriuretic_peptide|CGPR
 Neurexins|CGPR
 Neuropeptide_receptor|CGPR
+Neuropeptides|CGPR
 Notch|CGPR
 OGT_family|CGPR
 OR|CGPR
@@ -457,6 +470,7 @@ PFN|CGPR
 PI3K|CGPR
 PI3K_p110|CGPR
 PI3K_p85|CGPR
+PI4K|CGPR
 PIK3R_I|CGPR
 PIM|CGPR
 PKA|CGPR
@@ -518,6 +532,7 @@ RFC|CGPR
 RFX|CGPR
 RGL|CGPR
 RHO|CGPR
+RIPK|CGPR
 RLR|CGPR
 RNApo_I|CGPR
 RNApo_II|CGPR
@@ -526,6 +541,9 @@ ROCK|CGPR
 ROR|CGPR
 RPA|CGPR
 RSK|CGPR
+RSTK|CGPR
+RSTK1|CGPR
+RSTK2|CGPR
 RTK|CGPR
 RXR|CGPR
 RYR|CGPR
@@ -558,6 +576,7 @@ SMURF|CGPR
 SNAI|CGPR
 SOD|CGPR
 SOS|CGPR
+SPHK|CGPR
 SPRED|CGPR
 SPRY|CGPR
 SRC|CGPR
@@ -570,8 +589,10 @@ Sodium_channels|CGPR
 Sodium_voltage_gated_channel_alpha_subunits|CGPR
 Sodium_voltage_gated_channel_beta_subunits|CGPR
 Sulfonylurea_receptor|CGPR
+TAC|CGPR
 TAOK|CGPR
 TAP|CGPR
+TAT_associated_kinase|CGPR
 TCF_LEF|CGPR
 TCR|CGPR
 TEAD|CGPR
@@ -583,10 +604,12 @@ THBS|CGPR
 THR|CGPR
 TIAM|CGPR
 TIF_IB|CGPR
+TK|CGPR
 TLR|CGPR
 TN|CGPR
 TNF|CGPR
 TNFRSF|CGPR
+TOP|CGPR
 TOP2|CGPR
 TPCN|CGPR
 TRP|CGPR