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Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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@rotblauer @PankratzLab

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  • peddy Public

    Forked from brentp/peddy

    genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

    Jupyter Notebook MIT License Updated Dec 23, 2024

  • hugo-theme-gallery Public

    Forked from nicokaiser/hugo-theme-gallery

    Gallery Theme for Hugo

    JavaScript MIT License Updated Dec 9, 2024

  • long-read-exp Public

    Experimental utilities for LRS

    Python MIT License Updated Oct 15, 2024

  • sandcat Public

    sandcat

    Python MIT License Updated Sep 27, 2024

  • long-read-plot Public

    Exploratory plots for long read sequencing data

    R GNU General Public License v3.0 Updated Jun 24, 2024

  • cigar_swap Public

    Swap in cigar strings from one bam file to another

    Python Updated May 21, 2024

  • loma Public

    Forked from kolikem/loma
    Python Updated May 9, 2024

  • unialigner Public

    Forked from seryrzu/unialigner
    C++ BSD 3-Clause "New" or "Revised" License Updated Apr 9, 2024

  • lights Public

    Python GNU General Public License v3.0 Updated Mar 28, 2024

  • pav Public

    Forked from EichlerLab/pav

    Phased assembly variant caller

    Python Updated Mar 26, 2024

  • TT-Mars Public

    Forked from ChaissonLab/TT-Mars

    Structural Variants Assessment Based on Haplotype-resolved Assemblies

    Python BSD 3-Clause "New" or "Revised" License Updated Mar 21, 2024

  • mochawdl Public

    Forked from freeseek/mochawdl

    MoChA WDL pipelines

    WDL MIT License Updated Feb 2, 2024

  • Sniffles Public

    Forked from fritzsedlazeck/Sniffles

    Structural variation caller using third generation sequencing

    Python MIT License Updated Jan 12, 2024

  • mimash Public

    Python Updated Dec 20, 2023

  • samplot Public

    Forked from ryanlayer/samplot

    Plot structural variant signals from many BAMs and CRAMs

    Python MIT License Updated Nov 27, 2023

  • VAtools Public

    Forked from griffithlab/VAtools

    A set of tools to annotate VCF files with expression and readcount data

    Python MIT License Updated Oct 17, 2023

  • truvari Public

    Forked from ACEnglish/truvari

    Structural variant toolkit for VCFs

    Python MIT License Updated Sep 12, 2023

  • cue Public

    Forked from PopicLab/cue

    Deep learning framework for SV calling and genotyping

    Jupyter Notebook 1 MIT License Updated Aug 8, 2023

  • RUFUS Public

    Forked from jandrewrfarrell/RUFUS

    RUFUS k-mer based genomic variant detection

    C++ Updated Jul 14, 2023

  • docker-bcftools Public

    Forked from genome/docker-bcftools

    Docker container for bcftools

    Dockerfile Updated Apr 25, 2023

  • NGS-TL Public

    Forked from PankratzLab/NGS-TL

    Estimate telomere length (TL) from whole genome sequencing

    Shell GNU General Public License v3.0 Updated Feb 21, 2023

  • igv-xvfb Public

    Forked from PankratzLab/igv-xvfb

    IGV with Xvfb

    Dockerfile GNU General Public License v3.0 Updated Feb 20, 2023

  • IGV-VM Public

    Forked from PankratzLab/IGV-VM

    Build IGV instance that can take screenshots without a GUI or X11

    Dockerfile GNU General Public License v3.0 Updated Feb 10, 2023

  • pio Public

    python bio

    Shell MIT License Updated Nov 11, 2022

  • ExomeDepth Public

    Forked from vplagnol/ExomeDepth

    ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.

    C Updated Oct 23, 2022

  • samtools-view Public

    sam tools view workflow

    WDL 2 2 MIT License Updated Aug 26, 2022

  • mosdepth-docker Public

    Forked from PankratzLab/mosdepth-docker
    WDL MIT License Updated Aug 22, 2022

  • PHESANT Public

    Forked from MRCIEU/PHESANT

    PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank

    R MIT License Updated Feb 3, 2022

  • riverway-gis Public

    Forked from whilei/riverway-gis

    GIS data for life on river way

    Updated Jan 18, 2022

  • systemd-ngrok Public

    Forked from vincenthsu/systemd-ngrok

    Automatically start ngrok by systemd

    Shell The Unlicense Updated Jan 22, 2021