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Clarify that CRAM SAM header may be uncompressed (PR samtools#682)
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I added "If compressed, ", but this commit also adjusted the rather
odd line wrapping for the paragraph (of which we have a mixture of
styles in use).

Fixes samtools#677
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jkbonfield committed Nov 8, 2022
1 parent b1f274f commit 4b61c4d
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions CRAMv3.tex
Original file line number Diff line number Diff line change
Expand Up @@ -586,10 +586,10 @@ \section{\textbf{Container header structure}}

\subsection{\textbf{CRAM header container}}

The first container in a CRAM file contains a textual header in a single block, optionally
gzip compressed. This text header currently matches the SAM header specification. Only
gzip is allowed as compression method for this block. The CRAM header container does not
include a compression header block.
The first container in a CRAM file contains a textual header in a single block, optionally gzip compressed.
This text header currently matches the SAM header specification.
If compressed, only gzip is allowed as compression method for this block.
The CRAM header container does not include a compression header block.

It is recommended to reserve 50\% more space in the CRAM header container than
is required for the SAM header text by optionally padding the container with a second
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