Release 0.9.1

• This tweaks the PB CCS profile (HiFi) parameters to no longer restrict the maximum quality value, as requested by users as some software explicitly searches for Q93. The old parameters can be explicitly set if desired.

• A major speed increase to the low-complexity mask functionality, particularly important for long read technologies.

• Add a -k/-K options to keep (preserve) specific quality values. For example -k 93 will preserve maximum Sequel II HiFi quality. -k preserves these scores when deemed appropriate - such as having discrepant calls in the pileup - while -K preserves them for all bases.

v0.9.0

This fixes a bug with SEQ "*" and adds PacBio HiFi (CCS) specific options.

Crumble 0.8.3

This fixes issue #9. When a new chromosome started with an unmapped (but placed) read, the crumble output could briefly become unsorted.

There are no other changes.

Crumvle 0.8.2

No substantive code changes since 0.8.1.

This tidies up help messages and adds a LICENSE.md file.

Crumble 0.8.1

The only change since 0.8 is the inclusion of autoconf / automake.