Dissecting host-microbiome interaction effects on phytoplankton microbiome composition and diversity

Authors: Jinny W. Yang and Vincent J. Denef

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This is the repository for Yang, Jinny Wu, and Vincent J. Denef. "Dissecting host‐microbiome interaction effects on phytoplankton microbiome composition and diversity." Environmental Microbiology 26, no. 2 (2024): e16585.

Information about this repository:

• Original fastq files:
  • The raw data can be obtained from the Sequence Read Archive at NCBI under BioProject PRJNA941033.
• Code files
  • R scripts.Rmd includes all the data analysis
  • Functions.R has all the function written.
• Directories/Directory Set up:
  • "Final_table_dada2.tsv" is the raw ASV table.
  • "MetaData.csv" includes the metada for data analysis.
  • "Taxonomy.csv" includes the taxoonomy data for each ASV.
  • "AE_Final_table_data2.tsv" and "AE_MetaData.csv" includes ASV table and metadata of the additional experiment.