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trying to force graph update
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jeremyButtler committed Aug 12, 2023
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Expand Up @@ -275,7 +275,7 @@ I split the facets into if it was a global alignment
Needleman Wunsch, and Hirschberg (hb) aligners from
bio-alignment (bio-align), emobss, and
Complete-Striped-Smith-Waterman-Library.
](analysis/alnSeq-memory.svg)
(analysis/alnSeq-memory.svg)

As expected the memory usage was much lower for the
Hirschberg aligners and striped Smith Waterman
Expand Down Expand Up @@ -333,7 +333,7 @@ Despite this ssw still uses less memory than alnSeq's
The Waterman Smith Bio-alignment (bio-align) tests were
discarded due to Bio-alignments Waterman Smith
algorithm printing out the scoring matrix.
](analysis/alnSeq-time.svg)
(analysis/alnSeq-time.svg)

For time usage we found that emboss or alnSeqs two bit
Hirschberg were often the slowest algorithms, while
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