A 'ggplot2' Extension for Consistent Axis Alignment

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

A modern Wine wrapper for macOS built with SwiftUI

Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

R package BioPred

Inferring and visualizing clonal evolution in multi-sample cancer sequencing

A list of scRNA-seq analysis tools

scRNAseq analysis notes from Ming Tang

Jupyter notebook with Pytorch implementation of Neural Ordinary Differential Equations

A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discovery (EMNLP'24)

CLIP (Contrastive Language-Image Pretraining), Predict the most relevant text snippet given an image

ImageBind One Embedding Space to Bind Them All

Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries

RNA-seq prediction with deep convolutional neural networks.

Awesome-LLM: a curated list of Large Language Model

A full spaCy pipeline and models for scientific/biomedical documents.

Experimental design framework for scRNAseq population studies (eQTL and DE)

Aggregation of Multi-subject scRNA-seq Data

Burden testing against public controls

scripts to automatically update ANNOVAR db

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

Annotates variants in MAF with OncoKB annotation.

Applied Computational Genomics Course at UU: Spring 2020