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============= | ||
CSV Validator | ||
============= | ||
============ | ||
csvvalidator | ||
============ | ||
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CSV Validator is a small library to support validation of tabular data contained | ||
in delimited file formats. | ||
This module provides some simple utilities for validating data contained in CSV | ||
files, or other similar data sources. | ||
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Note that the `csvvalidator` module is intended to be used in combination with | ||
the standard Python `csv` module. The `csvvalidator` module **will not** | ||
validate the *syntax* of a CSV file. Rather, the `csvvalidator` module can be | ||
used to validate any source of row-oriented data, such as is provided by a | ||
`csv.reader` object. | ||
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I.e., if you want to validate data from a CSV file, you have to first construct | ||
a CSV reader using the standard Python `csv` module, specifying the appropriate | ||
dialect, and then pass the CSV reader as the source of data to either the | ||
`CSVValidator.validate` or the `CSVValidator.ivalidate` method. | ||
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The `CSVValidator` class is the foundation for all validator objects that are | ||
capable of validating CSV data. | ||
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You can use the CSVValidator class to dynamically construct a validator, e.g.:: | ||
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import sys | ||
import csv | ||
from csvvalidator import * | ||
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field_names = ( | ||
'study_id', | ||
'patient_id', | ||
'gender', | ||
'age_years', | ||
'age_months', | ||
'date_inclusion' | ||
) | ||
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validator = CSVValidator(field_names) | ||
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# basic header and record length checks | ||
validator.add_header_check('EX1', 'bad header') | ||
validator.add_record_length_check('EX2', 'unexpected record length') | ||
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# some simple value checks | ||
validator.add_value_check('study_id', int, | ||
'EX3', 'study id must be an integer') | ||
validator.add_value_check('patient_id', int, | ||
'EX4', 'patient id must be an integer') | ||
validator.add_value_check('gender', enumeration('M', 'F'), | ||
'EX5', 'invalid gender') | ||
validator.add_value_check('age_years', number_range_inclusive(0, 120, int), | ||
'EX6', 'invalid age in years') | ||
validator.add_value_check('date_inclusion', datetime_string('%Y-%m-%d'), | ||
'EX7', 'invalid date') | ||
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# a more complicated record check | ||
def check_age_variables(r): | ||
age_years = int(r['age_years']) | ||
age_months = int(r['age_months']) | ||
valid = (age_months >= age_years * 12 and | ||
age_months % age_years < 12) | ||
if not valid: | ||
raise ValueError(age_years, age_months) | ||
validator.add_record_check(check_age_variables, | ||
'EX8', 'invalid age variables') | ||
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# validate the data and write problems to stdout | ||
data = csv.reader('/path/to/data.csv', delimiter='\t') | ||
problems = validator.validate(data) | ||
write_problems(problems, sys.stdout) | ||
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For more complex use cases you can also sub-class `CSVValidator` to define | ||
re-usable validator classes for specific data sources. | ||
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The source code for this module lives at: | ||
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https://github.com/alimanfoo/csvvalidator | ||
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For a complete account of all of the functionality available from this module, | ||
see the example.py and tests.py modules in the source code repository. | ||
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TODO finish this |
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""" | ||
TODO | ||
Tests for the `csvvalidator` module. | ||
""" | ||
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