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added repronim, fixed schedule
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AlexandreHutton authored Jan 14, 2021
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23 changes: 14 additions & 9 deletions _projects/mlcn.md
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&nbsp; &nbsp; &nbsp; &nbsp; <img src="/img/logos/logo-neurohub.png" width="170" height="70">
&nbsp; &nbsp; &nbsp; &nbsp; <img src="/img/logos/MCIN-logo-V01.png" width="131" height="27">
&nbsp; &nbsp; &nbsp; &nbsp; <img src="/img/logos/unique-logo.png" width="64" height="64">
&nbsp; &nbsp; &nbsp; &nbsp; <img src="/img/logos/repronim.png" width="64" height="64">
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From the 18th to 22nd of January, 2021, the **[NeuroDataScience ORIGAMI](https://neurodatascience.github.io/)** lab, the **McGill Centre for Integrative Neuroscience**, **HBHL’s NeuroHub** and **UNIQUE** will hold a workshop entitled “*Machine Learning for the Cognitive Neurosciences*”, whose objective will be to introduce researchers to both the conceptual and practical rudiments of machine learning as applied to neuroimaging. See preliminary schedule below.
From the 18th to 22nd of January, 2021, the **[NeuroDataScience ORIGAMI](https://neurodatascience.github.io/)** lab, the **McGill Centre for Integrative Neuroscience**, **HBHL’s NeuroHub**, **ReproNim**, and **UNIQUE** will hold a workshop entitled “*Machine Learning for the Cognitive Neurosciences*”, whose objective will be to introduce researchers to both the conceptual and practical rudiments of machine learning as applied to neuroimaging. See preliminary schedule below.

Though attendees are expected to have a general familiarity with brain imaging and conventional statistical analyses, the first two days introduce attendees to the software environment that will serve for the practical exercises during the workshop, including some basics of the Linux command line (Bash), Git, the Python programming language, and several Python-based packages for scientific computing, courtesy of [Calcul Québec](http://www.calculquebec.ca/).

Expand Down Expand Up @@ -49,37 +50,41 @@ Here are the people who have generously offered to help out:
**Patrick Bermudez**, MNI, McGill University
**Alan C. Evans**, MCIN, McGill University
**Jean-Baptiste Poline**, MNI, McGill University

NeuroDataScience: ORIGAMI
McGill Centre for Integrative Neuroscience
HBHL-NeuroHub
UNIQUE

### Preliminary Schedule:
**Groups**:
To better support participants in the initial days of the workshop, the groups are split into two. If you registered for the Python intro on Monday, you are in Group 1. Otherwise, you are in Group 2.


**Day 1** (Monday)
_Group 1_:
09:00 – 12:00 Calcul Québec – Introduction to Programming with Python
_Group 2_:
09:00 - 10:00 Linux command line: Bash.
10:00 - 11:00 ORIGAMI - Git & version control
09:00 - 10:00 Peer Herholz - Linux command line: Bash.
10:00 - 12:00 Kendra Oudyk - Git & version control

**Day 2** (Tuesday)
_Group 1_:
09:00 - 10:00 Linux command line: Bash.
10:00 - 11:00 ORIGAMI - Git & version control
09:00 - 10:00 Peer Herholz - Linux command line: Bash.
10:00 - 12:00 Kendra Oudyk - Git & version control
_Group 2_:
09:00 – 12:00 Calcul Québec – Introduction to Programming with Python

**Day 3** (Wednesday)
09:00 – 10:30 Dr. Tal Yarkoni – “Machine Learning as Applied to Neuroimaging”
10:30 – 12:30 Alexandre Hutton – Hands-on ML: dataset handling, sklearn/nilearn, estimators & models, model evaluation
13:30 – 16:00 Practical exercises
13:30 – 16:00 Practical exercises (offline)

**Day 4** (Thursday)
09:00 – 12:30 Alexandre Hutton – Hands-on ML: cross-validation, ROC & AUC, visualization, evaluation metrics
13:30 – 16:00 Practical exercises
13:30 – 16:00 Practical exercises (offline)

**Day 5** (Friday)
09:00 – 10:00 Dr. Ella Gabitov – “The elephant in the room: to explain or to predict, that is the question”
10:00 – 12:30 Alexandre Hutton – Hands-on ML: confounds. model interpretation (and lack thereof)
13:30 – 16:30 Practical exercises, data clinic
13:30 – 16:30 Practical exercises (offline), data clinic
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