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Added extraction page (to search page, because idk)+ modified search_…
…page.php without case-sensitive search + modified Izem Links
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,144 @@ | ||
| <?php | ||
| session_start(); | ||
| if (!isset($_SESSION['Email'])) { | ||
| header("Location: LoginPage.php"); | ||
| } | ||
| ?> | ||
| <!DOCTYPE html> | ||
| <html lang="en"> | ||
| <head> | ||
| <meta charset="UTF-8"> | ||
| <title> Search </title> | ||
| <link rel="stylesheet" type="text/css" href="website.css"> | ||
| <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css"> | ||
| <!--CSS for log out button--> | ||
| </head> | ||
| <body> | ||
| <header> | ||
| <h1>CALI</h1> | ||
| </header> | ||
| <div class="topnav"> | ||
| <?php require_once 'libphp/Menu.php'; | ||
| echo Menu($_SESSION['Status'], "search_page.php") ?> | ||
| </div> | ||
|
|
||
| <div class="center"> | ||
| <h2>Extract data</h2> | ||
| <div class="container"> | ||
| <form action="<?php echo $_SERVER['PHP_SELF']; ?>" method="POST"> | ||
| <?php include_once "Extract_data.php"; ?> | ||
| <form> | ||
| </div> | ||
| </div> | ||
| <div class="center"> | ||
| <h2> Search </h2> | ||
| <div class="container"> | ||
| <form action="<?php echo $_SERVER['PHP_SELF']; ?>" method="POST"> | ||
| <label for="species_name"><b>Species name</b> </label> | ||
| <input type="text" name="species_name" id="species_name" placeholder="Species name"><br> | ||
|
|
||
| <label for="strain_name"><b>Strain name</b></label> | ||
| <input type="text" name="strain_name" id="strain_name" placeholder="Strain name"><br> | ||
|
|
||
| <label for="genetic_support"><b>Genetic support (chromosome or name of plasmid typically)</b></label> | ||
| <input type="text" name="genetic_support" id="genetic_support" placeholder="Genetic support"><br> | ||
|
|
||
| <label for="chr_ID"><b>Chromosome ID</b></label> | ||
| <input type="text" id="chr_ID" name="id_genome" placeholder="Chromosome ID"><br> | ||
|
|
||
| <label for="seq_genome"><b>Genome sequence</b></label> | ||
| <input type="text" name="genome_seq" id="seq_genome" placeholder="Genome sequence"><br> | ||
|
|
||
| <label for="gene_id"><b>Gene ID</b></label> | ||
| <input type="text" id="gene_id" name="gene_id" placeholder="Gene ID"><br> | ||
|
|
||
| <label for="gene_symbol"><b>Gene symbol</b></label> | ||
| <input type="text" name="gene_symbol" id="gene_symbol" placeholder="Gene symbol"><br> | ||
|
|
||
| <label for="sequence_nt"><b>Nucleotide sequence or pattern (3 to 950 characters)</b></label> | ||
| <input type="text" id="sequence_nt" name="sequence_nt" placeholder="Nucleotide pattern" minlength="3" | ||
| maxlength="950"><br> | ||
|
|
||
| <label for="prot_id"><b>Protein ID</b> </label> | ||
| <input type="text" id="prot_id" name="id_transcript" placeholder="Protein ID"><br> | ||
|
|
||
| <label for="description"><b>Function</b></label> | ||
| <input type="text" id="description" name="description" placeholder="Function"><br> | ||
|
|
||
| <label for="prot_seq"><b>Protein sequence or pattern (3 to 320 characters)</b></label> | ||
| <input type="text" id="prot_seq" name="prot_seq" placeholder="Protein pattern" minlength="3" | ||
| maxlength="320"><br><br> | ||
|
|
||
| <label for="result_type"><b>Select type of results</b></label> | ||
| <select name="result_type" id="result_type"> | ||
| <option value="gene_prot"> Gene / Protein</option> | ||
| <option value="Genome"> Genome</option> | ||
| </select><br><br> | ||
| <button class="big_submit_button" name="submit" type="submit" value="Submit"> Submit</button> | ||
| </form> | ||
| <?php | ||
|
|
||
| include_once 'libphp/db_utils.php'; | ||
| connect_db(); | ||
| if (isset($_POST["submit"])) { | ||
|
|
||
| $info_formulaire = ["species_name", "strain_name", "genetic_support", "id_genome", "sequence_nt", "id_transcript", "prot_seq", "gene_id", "gene_symbol", "description"]; | ||
| $col_table = ["genome.species", "genome.strain", "transcript.genetic_support", "genome.id_genome", | ||
| "transcript.sequence_nt", "transcript.id_transcript", "transcript.sequence_p", "annotate.id_gene", "annotate.symbol", "annotate.description"]; | ||
|
|
||
| if ($_POST["result_type"] == "gene_prot") { // Si on veut en résultat des genes ou des proteines | ||
| $query_sql = "SELECT distinct(annotate.id_transcript) FROM website.genome,website.transcript, website.annotate WHERE genome.id_genome = transcript.id_genome AND annotate.id_transcript = transcript.id_transcript and validated=1"; | ||
| } else if ($_POST["result_type"] == "Genome") { // Si on veut en résultat des génomes | ||
| $query_sql = "SELECT distinct(genome.id_genome) FROM website.genome,website.transcript, website.annotate WHERE genome.id_genome = transcript.id_genome AND annotate.id_transcript = transcript.id_transcript and validated=1"; | ||
| } | ||
|
|
||
| for ($i = 0; $i <= count($info_formulaire) - 1; $i++) { //Pour chaque champ du formulaire | ||
| $ch = $info_formulaire[$i]; // $ch = ensemble des ID du formulaire | ||
| $col = $col_table[$i]; // $col = ensemble des attributs des tables SQL | ||
| if (!empty($_POST[$ch])) { //Si le champ est rempli | ||
| if (isset($query_sql)) { | ||
| if (($ch == "sequence_nt") || ($ch == "sequence_p")) { // Si on recherche des motifs (nucleotidique ou proteique), on utilise un " LIKE % " | ||
| $query_sql .= "AND " . $col . " LIKE '%" . $_POST[$ch] . "%' "; | ||
| } else if (($ch == "id_genome") || ($ch == "id_transcript")) {// Si ce sont des clés primaires, on utilise " = " de façon casse sensible | ||
| $query_sql .= "AND " . $col . "='" . $_POST[$ch] . "'"; | ||
| } else { //Sinon on utilise "=" en mettant tout en minuscule | ||
| $query_sql .= "AND lower(" . $col . ")=lower('" . $_POST[$ch] . "')"; | ||
| } | ||
| } | ||
| } | ||
| } | ||
| $res = pg_query($db_conn, $query_sql) or die(pg_last_error()); | ||
| if (pg_num_rows($res) == 0) { | ||
| echo "No results"; | ||
| } else { | ||
| /*Liens vers fiches*/ | ||
| echo "<table>"; | ||
| while ($line = pg_fetch_assoc($res)) { | ||
| echo "\t<tr>\n"; | ||
| foreach ($line as $col_value) { | ||
| if ($_POST["result_type"] == "gene_prot") { | ||
| echo "\t\t<td> <a href = 'Gene-ProtPage.php?id=$col_value' target='_blank'> $col_value </a></td>\n"; | ||
| } else if ($_POST["result_type"] == "Genome") { | ||
| echo "\t\t<td> <a href = 'GenomePage.php?id=$col_value' target='_blank'> $col_value </a></td>\n"; | ||
| } | ||
| } | ||
| echo "\t</tr>\n"; | ||
| } | ||
| echo "</table>\n"; | ||
| } | ||
|
|
||
|
|
||
| // Libère le résultat | ||
| pg_free_result($res); | ||
| } | ||
|
|
||
|
|
||
| ?> | ||
| </div> | ||
| </div> | ||
| <footer> | ||
| <a href="Contact.php">Contact</a><br> | ||
| <p>© CALI 2021</p> | ||
| </footer> | ||
| </body> | ||
| </html> |