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Mavenize TrackMate_
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dscho committed Jul 4, 2012
1 parent beaa54e commit dcda2ca
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Showing 232 changed files with 132 additions and 1 deletion.
2 changes: 1 addition & 1 deletion Fakefile
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Expand Up @@ -346,7 +346,6 @@ src-plugins/Script_Editor/function.png[bin/copy-file.bsh $PRE $TARGET] <- images
CLASSPATH(jars/zs.jar)=jars/Jama.jar


CLASSPATH(plugins/TrackMate_.jar)=jars/itextpdf.jar:jars/batik.jar:jars/ij.jar:plugins/3D_Viewer.jar:plugins/loci_tools.jar:jars/fiji-lib.jar:jars/imglib.jar:jars/imglib-ij.jar:jars/imglib-io.jar:jars/imglib-algorithms.jar:jars/jdom.jar:jars/jdom-contrib.jar:jars/jgraphx.jar:jars/jgrapht-jdk1.6.jar:jars/jfreechart.jar:jars/jcommon.jar:jars/Jama.jar:$JAVA3D_JARS
CLASSPATH(jars/VIB-lib.jar)=jars/ij.jar:jars/Jama.jar:jars/junit.jar:jars/pal-optimization.jar:jars/jzlib.jar:jars/fiji-lib.jar
CLASSPATH(plugins/Descriptor_based_registration.jar)=jars/ij.jar:jars/imglib.jar:jars/mpicbg.jar:jars/fiji-lib.jar:plugins/Fiji_Plugins.jar:jars/VIB-lib.jar:jars/Jama.jar:jars/imglib-algorithms.jar:jars/imglib-ij.jar:jars/imglib-io.jar:plugins/SPIM_Registration.jar:plugins/Stitching_.jar:$JAVA3D_JARS
CLASSPATH(jars/autocomplete.jar)=jars/rsyntaxtextarea.jar
Expand Down Expand Up @@ -472,6 +471,7 @@ plugins/SPIM_Opener.jar <- src-plugins/SPIM_Opener/pom.xml
plugins/SPIM_Registration.jar <- src-plugins/SPIM_Registration/pom.xml
plugins/Graph_Cut.jar <- src-plugins/Graph_Cut/pom.xml
jars/weave_jy2java.jar <- src-plugins/weave_jy2java/pom.xml
plugins/TrackMate_.jar <- src-plugins/TrackMate_/pom.xml

# pre-Java5 generics ;-)

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3 changes: 3 additions & 0 deletions src-plugins/TrackMate_/.factorypath
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@@ -0,0 +1,3 @@
<factorypath>
<factorypathentry kind="VARJAR" id="M2_REPO/net/java/sezpoz/sezpoz/1.9/sezpoz-1.9.jar" enabled="true" runInBatchMode="true"/>
</factorypath>
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@@ -0,0 +1,5 @@
#Sun Jan 15 20:38:51 CET 2010
eclipse.preferences.version=1
org.eclipse.jdt.apt.aptEnabled=true
org.eclipse.jdt.apt.genSrcDir=target/classes
org.eclipse.jdt.apt.reconcileEnabled=false
122 changes: 122 additions & 0 deletions src-plugins/TrackMate_/pom.xml
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@@ -0,0 +1,122 @@
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>

<parent>
<groupId>sc.fiji</groupId>
<artifactId>pom-fiji-plugins</artifactId>
<version>2.0.0-SNAPSHOT</version>
</parent>

<artifactId>TrackMate_</artifactId>

<name>plugins/TrackMate_.jar</name>
<description></description>

<dependencies>
<dependency>
<groupId>jama</groupId>
<artifactId>Jama</artifactId>
<version>1.0.2</version>
</dependency>
<dependency>
<groupId>batik</groupId>
<artifactId>batik</artifactId>
<version>1.8</version>
</dependency>
<dependency>
<groupId>sc.fiji</groupId>
<artifactId>fiji-lib</artifactId>
<version>${imagej.version}</version>
</dependency>
<dependency>
<groupId>net.imagej</groupId>
<artifactId>ij</artifactId>
<version>${imagej1.version}</version>
</dependency>
<dependency>
<groupId>mpicbg</groupId>
<artifactId>imglib-algorithms</artifactId>
<version>${imagej.version}</version>
</dependency>
<dependency>
<groupId>mpicbg</groupId>
<artifactId>imglib-ij</artifactId>
<version>${imagej.version}</version>
</dependency>
<dependency>
<groupId>mpicbg</groupId>
<artifactId>imglib-io</artifactId>
<version>${imagej.version}</version>
</dependency>
<dependency>
<groupId>mpicbg</groupId>
<artifactId>imglib</artifactId>
<version>${imagej.version}</version>
</dependency>
<dependency>
<groupId>com.itextpdf</groupId>
<artifactId>itextpdf</artifactId>
<version>5.1.1</version>
</dependency>
<dependency>
<groupId>jfree</groupId>
<artifactId>jcommon</artifactId>
<version>1.0.15</version>
</dependency>
<dependency>
<groupId>org.jdom</groupId>
<artifactId>jdom-contrib</artifactId>
<version>1.1.3</version>
</dependency>
<dependency>
<groupId>org.jdom</groupId>
<artifactId>jdom</artifactId>
<version>1.1</version>
</dependency>
<dependency>
<groupId>jfree</groupId>
<artifactId>jfreechart</artifactId>
<version>1.0.13</version>
</dependency>
<dependency>
<groupId>jgrapht</groupId>
<artifactId>jgrapht-jdk1.6</artifactId>
<version>0.8.1</version>
</dependency>
<dependency>
<groupId>jgraph</groupId>
<artifactId>jgraphx</artifactId>
<version>1.10.0.3</version>
</dependency>
<dependency>
<groupId>java3d</groupId>
<artifactId>j3d-core</artifactId>
<version>1.5.2</version>
</dependency>
<dependency>
<groupId>java3d</groupId>
<artifactId>j3d-core-utils</artifactId>
<version>1.5.2</version>
</dependency>
<dependency>
<groupId>java3d</groupId>
<artifactId>vecmath</artifactId>
<version>1.5.2</version>
</dependency>
<dependency>
<groupId>sc.fiji</groupId>
<artifactId>3D_Viewer</artifactId>
<version>${imagej.version}</version>
</dependency>
<dependency>
<groupId>loci</groupId>
<artifactId>loci_tools</artifactId>
<version>4.4-SNAPSHOT</version>
</dependency>
</dependencies>

</project>
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1 change: 1 addition & 0 deletions src-plugins/pom.xml
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Expand Up @@ -131,6 +131,7 @@
<module>SPIM_Registration</module>
<module>Graph_Cut</module>
<module>weave_jy2java</module>
<module>TrackMate_</module>
</modules>

<!-- NB: for project parent -->
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