Fixed slice axis, center crop, length, stride params.

ivadomed · Dec 22, 2021 · 580e9e9 · 580e9e9
1 parent cb6708c
commit 580e9e9
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Showing 3 changed files with 12 additions and 12 deletions.
diff --git a/config/seg_lesion.json b/config/seg_lesion.json
@@ -30,7 +30,7 @@
             "filter_empty_mask": false,
             "filter_empty_input": false
         },
-        "slice_axis": "axial",
+        "slice_axis": "sagittal",
         "multichannel": false,
         "soft_gt": false
     },
@@ -94,7 +94,7 @@
             "dspace": 1.0
         },
         "CenterCrop": {
-            "size": [32, 64, 128]
+            "size": [128, 64, 32]
         },
         "RandomReverse": {
             "applied_to": ["im", "gt"],
@@ -140,8 +140,8 @@
     },
     "Modified3DUNet": {
         "applied": true,
-        "length_3D": [32, 64, 128],
-        "stride_3D": [32, 64, 128],
+        "length_3D": [128, 64, 32],
+        "stride_3D": [128, 64, 32],
         "attention": false,
         "n_filters": 8
     }

diff --git a/config/test_on_rater1.json b/config/test_on_rater1.json
@@ -30,7 +30,7 @@
             "filter_empty_mask": true,
             "filter_empty_input": true
         },
-        "slice_axis": "axial",
+        "slice_axis": "sagittal",
         "multichannel": false,
         "soft_gt": false
     },
@@ -57,7 +57,7 @@
             "dspace": 1.0
         },
         "CenterCrop": {
-            "size": [32, 64, 128]
+            "size": [128, 64, 32]
         },
         "NumpyToTensor": {},
         "NormalizeInstance": {
@@ -66,8 +66,8 @@
     },
     "Modified3DUNet": {
         "applied": true,
-        "length_3D": [32, 64, 128],
-        "stride_3D": [32, 64, 128],
+        "length_3D": [128, 64, 32],
+        "stride_3D": [128, 64, 32],
         "attention": false,
         "n_filters": 8
     }

diff --git a/config/test_on_rater2.json b/config/test_on_rater2.json
@@ -30,7 +30,7 @@
             "filter_empty_mask": true,
             "filter_empty_input": true
         },
-        "slice_axis": "axial",
+        "slice_axis": "sagittal",
         "multichannel": false,
         "soft_gt": false
     },
@@ -57,7 +57,7 @@
             "dspace": 1.0
         },
         "CenterCrop": {
-            "size": [32, 64, 128]
+            "size": [128, 64, 32]
         },
         "NumpyToTensor": {},
         "NormalizeInstance": {
@@ -66,8 +66,8 @@
     },
     "Modified3DUNet": {
         "applied": true,
-        "length_3D": [32, 64, 128],
-        "stride_3D": [32, 64, 128],
+        "length_3D": [128, 64, 32],
+        "stride_3D": [128, 64, 32],
         "attention": false,
         "n_filters": 8
     }