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Bump iqtree2 from f04b6f2 to 18fa5a3 #113

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Merged
merged 9 commits into from
Nov 29, 2024

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@dependabot dependabot bot commented on behalf of github Nov 28, 2024

Bumps iqtree2 from f04b6f2 to 18fa5a3.

Commits
  • 18fa5a3 Use the system's openmp library when building the iqtree library
  • See full diff in compare view

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Bumps [iqtree2](https://github.com/iqtree/iqtree2) from `f04b6f2` to `18fa5a3`.
- [Release notes](https://github.com/iqtree/iqtree2/releases)
- [Commits](iqtree/iqtree2@f04b6f2...18fa5a3)

---
updated-dependencies:
- dependency-name: iqtree2
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code labels Nov 28, 2024
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dependabot bot commented on behalf of github Nov 29, 2024

A newer version of iqtree2 exists, but since this PR has been edited by someone other than Dependabot I haven't updated it. You'll get a PR for the updated version as normal once this PR is merged.

@rmcar17 rmcar17 enabled auto-merge (squash) November 29, 2024 05:21
@rmcar17 rmcar17 merged commit c7f894c into main Nov 29, 2024
40 checks passed
@dependabot dependabot bot deleted the dependabot/submodules/iqtree2-18fa5a3 branch November 29, 2024 05:28
rmcar17 added a commit to rmcar17/piqtree that referenced this pull request Nov 29, 2024
…qtree#42)

* Bump iqtree2 from `f04b6f2` to `18fa5a3`

Bumps [iqtree2](https://github.com/iqtree/iqtree2) from `f04b6f2` to `18fa5a3`.
- [Release notes](https://github.com/iqtree/iqtree2/releases)
- [Commits](iqtree/iqtree2@f04b6f2...18fa5a3)

---
updated-dependencies:
- dependency-name: iqtree2
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>

* DEV: remove single core build flag

* DEV: build on mac with correct compiler

* DEV: include openMP flags in `setup.py`

* DEV: add Xpreprocessor flag

* DEV: specify CC and CXX

* DEV: try to correctly link openmp libs

* MAINT: resolve ruff warnings

* DEV: ensure that strs rather than Paths are used for setup

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Robert McArthur <robert.mcarthur@anu.edu.au>
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