parsmultistate to obsolete

iqtree · May 6, 2017 · aa80305 · aa80305
1 parent c692dde
commit aa80305
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Showing 4 changed files with 3 additions and 4 deletions.
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -512,7 +512,6 @@ add_executable(iqtree
 eigendecomposition.cpp eigendecomposition.h
 gzstream.cpp gzstream.h
 optimization.cpp optimization.h
-parsmultistate.cpp parsmultistate.h
 pda.cpp
 phyloanalysis.cpp phyloanalysis.h
 stoprule.cpp stoprule.h

diff --git a/parsmultistate.cpp → obsolete/parsmultistate.cpp b/parsmultistate.cpp → obsolete/parsmultistate.cpp
diff --git a/parsmultistate.h → obsolete/parsmultistate.h b/parsmultistate.h → obsolete/parsmultistate.h
diff --git a/pda.cpp b/pda.cpp
@@ -54,7 +54,7 @@
 #include "phyloanalysis.h"
 #include "tree/matree.h"
 //#include "ngs.h"
-#include "parsmultistate.h"
+//#include "parsmultistate.h"
 //#include "gss.h"
 #include "alignment/maalignment.h" //added by MA
 #include "tree/ncbitree.h"
@@ -2533,8 +2533,8 @@ int main(int argc, char *argv[]) {
 	// call the main function
 	if (Params::getInstance().tree_gen != NONE) {
 		generateRandomTree(Params::getInstance());
-	} else if (Params::getInstance().do_pars_multistate) {
-		doParsMultiState(Params::getInstance());
+//	} else if (Params::getInstance().do_pars_multistate) {
+//		doParsMultiState(Params::getInstance());
 	} else if (Params::getInstance().rf_dist_mode != 0) {
 		computeRFDist(Params::getInstance());
 	} else if (Params::getInstance().test_input != TEST_NONE) {