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1. hcr-prober hcr-prober Public

   HCR-prober is a powerful, flexible, and user-friendly command-line pipeline for designing DNA probes for third-generation *in situ* Hybridization Chain Reaction (HCR v3.0).

   Python

2. crustome crustome Public

   CrusTome: A transcriptome database resource for large-scale analyses across Crustacea. Repository contains example script, links to database download, and supplementary files from manuscript.

   Shell 3

3. PIA2 PIA2 Public

   Forked from xibalbanus/PIA2

   Modified version of the Phylogenetically Informed Annotation tool (Speiser et al., 2014)

   Java

4. scripts scripts Public

   Helper scripts for a variety of tasks

   Python 2 1

5. ilps ilps Public

   Python 1

6. berghia-chemogpcrs berghia-chemogpcrs Public

   Shell