Adds min package version

[averissimo]

WIP :: parent issue: insightsengineering/nestdevs-tasks#7

Supersede:

• verdepcheck #148

🔴 Checklist for PR Reviewer

• Tag yourself next to this repo on Specify minimal version dependencies + add action nestdevs-tasks#7
• Package versions are the same or higher than main
• Package list is the same
  • Only exception is rmarkdown (may have been removed on Suggests)
• All packages in Imports, Depends & Suggests are in new section Config/Needs/verdepcheck
• Added entry to NEWS.md
• Last scheduled.yaml action was run succesfully (all 4 strategies)
  • important: it's not the last commit, it's the one that runs 4 Scheduled 🕰️ / Dependency actions
• scheduled.yaml SHOULD NOT have any push on any branches

🔴 What's needed before merging?

This PR depends on some upstream changes that need to be finalized/merged before being ready to review.

Change in code

• verdepcheck.yml action (see comments)
  • Remove on: push section
  • Change branch to main

PRS

• verdepcheck
  • Training verdepcheck#24
  • Fixes and improvements for strategies verdepcheck#26
• verdepcheck-action
  • Supports new strategies min_isolated and min_cohort r-verdepcheck-action#16

Changes description

• Adds minimum version for packages DESCRIPTION
• Adds Config/Need/verdepcheck section in DESCRIPTION
• Updates verdepcheck action

[github-actions]

Code Coverage Summary

Filename                                 Stmts    Miss  Cover    Missing
-------------------------------------  -------  ------  -------  -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R/as_cdisc.R                                39       4  89.74%   99-102
R/Callable.R                                45       0  100.00%
R/CallableCode.R                            36       2  94.44%   26, 63
R/CallableFunction.R                        88       3  96.59%   160-162
R/CallablePythonCode.R                      58      58  0.00%    21-227
R/cdisc_data.R                              45       1  97.78%   76
R/CDISCTealDataConnector.R                  20       3  85.00%   31, 36, 49
R/CDISCTealDataset.R                        46      11  76.09%   108-115, 204-206
R/CDISCTealDatasetConnector.R               26       1  96.15%   116
R/CodeClass.R                              111       1  99.10%   157
R/data_label.R                              36      13  63.89%   33-37, 56-63, 103
R/deep_clone_r6.R                            9       0  100.00%
R/dummy_function.R                           5       1  80.00%   23
R/formatters_var_labels.R                   49      21  57.14%   30, 38, 43-44, 46, 53, 99, 129-151
R/get_attrs.R                                2       2  0.00%    12-45
R/get_code.R                               173      19  89.02%   87, 140-143, 196-197, 207-208, 266, 297, 333, 337, 372, 381-385
R/get_dataname.R                             4       0  100.00%
R/get_dataset_label.R                        3       0  100.00%
R/get_dataset.R                             13       8  38.46%   39, 55, 80-86
R/get_datasets.R                            10       2  80.00%   96, 116
R/get_key_duplicates.R                      37       7  81.08%   41-47, 54-55
R/get_keys.R                                15       7  53.33%   67-68, 125-145
R/get_raw_data.R                            24      11  54.17%   168-181
R/include_css_js.R                           9       1  88.89%   20
R/is_pulled.R                                4       0  100.00%
R/JoinKeys.R                               183       7  96.17%   134, 233, 327, 330, 388-425
R/load_dataset.R                            25      18  28.00%   58-63, 87-186
R/MAETealDataset.R                         138      57  58.70%   53, 115, 153-208, 224-229, 236-245, 282, 323-339
R/mutate_dataset.R                          18       0  100.00%
R/set_args.R                                10       5  50.00%   34-38
R/teal_data.R                               31       2  93.55%   44, 52
R/TealData.R                               228     113  50.44%   206, 218-287, 330-337, 370-375, 377, 379-384, 386, 403-448
R/TealDataAbstract.R                       232      24  89.66%   72, 85-88, 97-106, 215-218, 429, 454-458, 480, 486
R/TealDataConnection.R                     297     180  39.39%   58-59, 64, 67, 70, 106-163, 183, 186-188, 194-200, 205-207, 233, 238, 254-277, 287, 300, 321, 325-330, 333-336, 358-360, 364-371, 374-377, 392-406, 425-426, 446-517, 535-543, 545, 549-564, 567-570, 602, 608-612, 626, 661-663, 672-674
R/TealDataConnector.R                      196     102  47.96%   178, 190, 194, 207, 210-219, 221, 229-238, 321-325, 383-488
R/TealDataset.R                            367      23  93.73%   141-151, 382-386, 442-451, 503
R/TealDatasetConnector_constructors.R      270      52  80.74%   177-214, 727-732, 930-1006
R/TealDatasetConnector.R                   326      90  72.39%   169, 237, 251, 256, 270, 433, 456-495, 525, 540-570, 660, 670, 679-686, 699, 714-741
R/to_relational_data.R                      54       7  87.04%   35-36, 40, 99, 106, 112, 127
R/topological_sort.R                        32       0  100.00%
R/utils.R                                   56       9  83.93%   22-23, 27, 76-83
R/validate_data_args.R                      32       0  100.00%
R/zzz.R                                      6       6  0.00%    4-12
TOTAL                                     3408     871  74.44%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: a6e93bc

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[github-actions]

Unit Tests Summary

       1 files       27 suites   21s ⏱️
   365 tests    365 ✔️ 0 💤 0 ❌
1 010 runs  1 010 ✔️ 0 💤 0 ❌

Results for commit a226722.

♻️ This comment has been updated with latest results.

[chlebowa]

Some versions lower than specified:
yaml

Scheduled jobs failed.

[averissimo]

@chlebowa The last scheduled.yaml jobs before removing the automatic trigger during pushes look ok.

Which jobs are you talking about? (screenshot below shows all run fine last time)

Some versions lower than insightsengineering/nestdevs-tasks#7 (comment):

That yaml version is only for packages that use the read_yaml and write_yaml API, which are not used in this package

This can be bumped higher though, I have no problem with that.

[chlebowa]

My mistake, I misunderstood the instruction and looked in the scheduled section of the workflows tab.