Search results

Clustering by variable and not by UMAP after RunHarmony

Status: Open.

#266 In immunogenomics/harmony;

· RRingquist opened on Jan 27, 2025

Changes in 1.2.3

Status: Open.

#265 In immunogenomics/harmony;

· wudustan opened on Dec 3, 2024

Typo in detailed walkthrough?

Status: Open.

#264 In immunogenomics/harmony;

· dariober opened on Nov 9, 2024

Best Practices for Sequential vs. Parallel Regression of Multiple Covariates in Harmony

Status: Open.

#263 In immunogenomics/harmony;

· vertesy opened on Nov 5, 2024

Is Regressing Covariates in Both ScaleData and RunHarmony Redundant and Potentially Problematic?

Status: Open.

#262 In immunogenomics/harmony;

· vertesy opened on Nov 5, 2024

different clustering results

questionFurther information is requestedFurther information is requested

Status: Open.

#259 In immunogenomics/harmony;

· pikapika505 opened on Sep 10, 2024

integrating snRNA (from multiome dataset) with scRNA public dataset

questionFurther information is requestedFurther information is requested

Status: Open.

#258 In immunogenomics/harmony;

· Urja25 opened on Sep 5, 2024

The error of harmony after subsetting data

questionFurther information is requestedFurther information is requested

Status: Open.

#256 In immunogenomics/harmony;

· Carrey14 opened on Aug 21, 2024

how to use harmony for Seurat Spatial Data?

Status: Open.

#254 In immunogenomics/harmony;

· flpxn7 opened on Jul 24, 2024

Gene-level Correction

questionFurther information is requestedFurther information is requested

Status: Open.

#252 In immunogenomics/harmony;

· DarioS opened on Jul 2, 2024

advice about parameters for integration

Status: Open.

#251 In immunogenomics/harmony;

· javiers1983 opened on May 24, 2024

"Is It Feasible to Use Harmony Directly for Batch Correction in Seurat V5 Instead of “ IntegrateLayers“?"

Status: Open.

#249 In immunogenomics/harmony;

· Tylesteven opened on Apr 20, 2024