3.12 #105
Workflow file for this run
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| name: wsidicomizer pytest | |
| on: [push, pull_request] | |
| jobs: | |
| cache_test_images: | |
| name: cache test images | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Prevent cache-miss on windows | |
| run: | | |
| git config --global core.autocrlf false | |
| git config --global core.eol lf | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Load test images from cache | |
| id: cache-test-images | |
| uses: actions/cache@v3 | |
| with: | |
| key: test-images-cache-${{ hashFiles('tests/download_test_images.py') }} | |
| path: WSIDICOMIZER_TESTDATA | |
| enableCrossOsArchive: true | |
| - name: Load test images | |
| if: steps.cache-test-images.outputs.cache-hit != 'true' | |
| env: | |
| WSIDICOMIZER_TESTDIR: WSIDICOMIZER_TESTDATA | |
| run: | | |
| python -m pip install -U pip | |
| python -m pip install requests | |
| python tests/download_test_images.py | |
| tests: | |
| needs: [cache_test_images] | |
| name: pytest ${{ matrix.os }}::py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 6 | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Prevent cache-miss on windows | |
| run: | | |
| git config --global core.autocrlf false | |
| git config --global core.eol lf | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| id: setup-python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Use GNU tar instead BSD tar | |
| if: matrix.os == 'windows-latest' | |
| shell: cmd | |
| run: echo C:\Program Files\Git\usr\bin>>"%GITHUB_PATH%" | |
| - name: Load test images from cache | |
| id: cache-test-images | |
| uses: actions/cache@v3 | |
| with: | |
| key: test-images-cache-${{ hashFiles('tests/download_test_images.py') }} | |
| path: WSIDICOMIZER_TESTDATA | |
| enableCrossOsArchive: true | |
| - name: Check test images are loaded | |
| if: steps.cache-test-images.outputs.cache-hit != 'true' | |
| uses: actions/github-script@v6 | |
| with: | |
| script: | | |
| core.setFailed('test images were not cached') | |
| - name: Set up Ubuntu | |
| if: matrix.os == 'ubuntu-latest' | |
| run: sudo apt-get install -y libturbojpeg libopenslide0 | |
| - name: Set up OSX | |
| if: matrix.os == 'macos-latest' | |
| run: brew install jpeg-turbo openslide | |
| - name: Set up Windows | |
| shell: pwsh | |
| if: matrix.os == 'windows-latest' | |
| run: | | |
| Invoke-WebRequest -Uri https://sourceforge.net/projects/libjpeg-turbo/files/2.1.4/libjpeg-turbo-2.1.4-vc64.exe/download -OutFile libjpeg-turbo-2.1.4-vc64.exe -UserAgent "NativeHost" | |
| 7z e libjpeg-turbo-2.1.4-vc64.exe -oC:\turbojpeg bin/turbojpeg.dll | |
| Invoke-WebRequest -Uri https://github.com/openslide/openslide-winbuild/releases/download/v20221217/openslide-win64-20221217.zip -OutFile openslide-win64-20221217.zip -UserAgent "NativeHost" | |
| 7z e openslide-win64-20221217.zip -oC:\openslide openslide-win64-20221217\bin | |
| - name: Set up paths in windows | |
| if: matrix.os == 'windows-latest' | |
| uses: actions/github-script@v6 | |
| with: | |
| script: | | |
| core.addPath('C:\\openslide') | |
| core.addPath('C:\\turbojpeg') | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install poetry | |
| - name: Install Application | |
| run: python -m poetry install | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| python -m poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| python -m poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=80 --statistics | |
| - name: Run tests | |
| env: | |
| TURBOJPEG: C:\turbojpeg | |
| WSIDICOMIZER_TESTDIR: WSIDICOMIZER_TESTDATA | |
| run: python -m poetry run pytest |