This repository was archived by the owner on Aug 5, 2026. It is now read-only.
Update Biorisk Database - #13
Merged
Merged
Conversation
…0690 and VFG041989gbWP011004171 to warnings intead of flagged.
… code descriptions.
…A8D9W4Z1, which I cannot find. Removed all instances of the {FLAG} text in descriptions.
alexanian
reviewed
Mar 30, 2026
| WP_086098263.1,{FLAG},TRUE | ||
| WP_115289619.1,{FLAG},TRUE | ||
| WP_155560339.1,{FLAG},TRUE | ||
| A0A8D9W4Z1,"{flag}",TRUE |
Member
There was a problem hiding this comment.
Let's rename to "unlabelled enterotoxin"
alexanian
approved these changes
Mar 30, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to subscribe to this conversation on GitHub.
Already have an account?
Sign in.
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Update for the performance of the Biorisk database for Msft test sets, based on the research from Brittany Rife Magalis.
Problematic and promiscuous Conotoxin profiles have been removed:
in addition to this, the follow Conotoxin profiles were kept:
Flagellin and T3SC flags were changed to FALSE.
The following profiles are also removed:
Q2UAZ8,Cytochrome P450 monooxygenase ppsD
A1CFL2,Patulin synthase
PTE, Phosphotriesterase family
A6QIR4,Endoribonuclease MazF
Notably, the following MazF entries remain:
BIORISK_0687,{FLAG}282330363_toxin mazF [Staphylococcus aureus subsp. aureus Btn1260],TRUE
PemKtoxin, PemK-like MazF-like toxin of type II toxin-antitoxin system,TRUE
BIORISK_0821,{FLAG}283789399_putative toxin-antitoxin system toxin component MazF family [Staphylococcus aureus subsp. aureus A017934/97],TRUE