Onchain permissioning deprecation warnings on CLI

[macfarla]

PR description

• Add deprecation messages to help descriptions
• Add warning log if permissioning-*-contract-enabled option is specified

Note I did not add any @Deprecation annotations to types or methods - feedback welcome on whether you think this is needed.

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• Considered documentation and added the doc-change-required label to this PR if updates are required.
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Locally, you can run these tests to catch failures early:

• unit tests: ./gradlew build
• acceptance tests: ./gradlew acceptanceTest
• integration tests: ./gradlew integrationTest
• reference tests: ./gradlew ethereum:referenceTests:referenceTests

[fab-10]

I think the @Deprecation is useful if the type or method is public and can be used by third party like in the plugin API

[macfarla]

I think the @Deprecation is useful if the type or method is public and can be used by third party like in the plugin API

yeah I went with adding it to API methods and plugins