Doctest longformer #16441

KMFODA · 2022-03-28T07:32:18Z

What does this PR do?

adds LONGFORMER PT to doctests

@patrickvonplaten - LongformerForMaskedLM and LongformerForQuestionAnswering have @replace_return_docstrings instead of @add_code_sample_docstrings. Should I be replacing them with that instead so that I can test for expected_output & expected_loss?

HuggingFaceDocBuilderDev · 2022-03-28T07:44:49Z

The documentation is not available anymore as the PR was closed or merged.

LysandreJik · 2022-03-28T08:49:31Z

Hey @KMFODA, thanks for your PR! Could you rebase/merge on main so that the CI passes? Thank you!

merge main

KMFODA · 2022-03-28T13:36:48Z

apologies @LysandreJik, had merged with master not main. Fixed now :).

utils/documentation_tests.txt

patrickvonplaten · 2022-04-06T10:43:54Z

src/transformers/models/longformer/modeling_longformer.py

@@ -1407,6 +1407,28 @@ def _set_gradient_checkpointing(self, module, value=False):
            module.gradient_checkpointing = value


+LONGFORMER_GENERATION_DOCSTRING = r"""


This example looks super cool - could you replace it with what's currently written for LongformerForMaskedLM ?

Agree with @patrickvonplaten

A few more comments:

No more need for LONGFORMER_GENERATION_DOCSTRING, but moving the docstring example to LongformerForMaskedLM directly

I think it would be great to add a comment before the line containing * 300, say Let's try a very long input.

ydshieh · 2022-04-06T11:09:15Z

src/transformers/models/longformer/modeling_longformer.py

        output_type=LongformerSequenceClassifierOutput,
        config_class=_CONFIG_FOR_DOC,
+        expected_output=[1, 2],


@KMFODA Is this the expected output? I think it should be something like ORIGINAL, PLAGIARISM, no?

patrickvonplaten · 2022-05-02T16:40:40Z

@KMFODA would it be ok if we go into the PR to finish it in case you don't have enough time? :-)

Rebase main

KMFODA · 2022-05-04T04:23:23Z

hey @patrickvonplaten, apologies for the delay. I've managed to work on the proposed changes. Let me know if anything else is missing?

patrickvonplaten · 2022-05-04T18:38:09Z

Great! Looks good to me actually :-) @ydshieh could you take a look maybe?

ydshieh

Hi, @KMFODA . Thank you for working on this! I left 3 comments about checkpoints, 2 of them about the heads and the randomness.

src/transformers/models/longformer/modeling_tf_longformer.py

ydshieh · 2022-05-04T19:16:11Z

src/transformers/models/longformer/modeling_tf_longformer.py

        checkpoint=_CHECKPOINT_FOR_DOC,
        output_type=TFLongformerSequenceClassifierOutput,
        config_class=_CONFIG_FOR_DOC,
+        expected_output="LABEL_0",
+        expected_loss=0.58,


I think the checkpoint _CHECKPOINT_FOR_DOC, which is allenai/longformer-base-4096 doesn't contain sequence classification head, and the head is randomly initialized. The result would be random, no?

This is correct!

ydshieh · 2022-05-04T19:17:10Z

src/transformers/models/longformer/modeling_tf_longformer.py

        checkpoint=_CHECKPOINT_FOR_DOC,
        output_type=TFLongformerTokenClassifierOutput,
        config_class=_CONFIG_FOR_DOC,
+        expected_output="['LABEL_0', 'LABEL_0', 'LABEL_0', 'LABEL_0', 'LABEL_0', 'LABEL_0', 'LABEL_1', 'LABEL_1', 'LABEL_0', 'LABEL_0', 'LABEL_0', 'LABEL_0']",
+        expected_loss=0.62,


Same comment as I give for sequence classification model.

ydshieh · 2022-05-04T19:20:29Z

@patrickvonplaten could you also check if my comment about randomly initialized is valid, please? I haven't run the examples myself though. I can double check tomorrow.

Update: I ran it, and the 2 tests failed as I think. Depending on @KMFODA, maybe we can merge this PR with only the PT file (and we work on TF part internally)? To address this situation, either a conversion of PT -> TF checkpoint, or using a tiny model checkpoint is required.

ydshieh · 2022-05-05T19:18:14Z

@KMFODA

If you are willing to deal with the TensorFlow version , could you try to use the TF checkpoint hf-internal-testing/tiny-random-longformer for TFLongformerForSequenceClassification and TFLongformerForTokenClassification.

Otherwise, it's totally OK that we revert the changes in src/transformers/models/longformer/modeling_tf_longformer.py + remove src/transformers/models/longformer/modeling_tf_longformer.py from utils/documentation_tests.txt, and we can merge this PR :-). Thank you!

KMFODA · 2022-05-11T23:58:16Z

hey @ydshieh thanks for the comments. Yes sure I just switched those 3 checkpoints now. I'm having issues with TF and my new M1 Mac so I can't test these now unfortunately. Thought I'd just commit these changes now in case you're in a rush but will try and test these changes soon as I get my TF library working.

ydshieh · 2022-05-12T06:17:25Z

Hi, @KMFODA , no rush on our side :-). But if you have trouble with TF on Mac, we can run it and update the expect values, just let us know. Thank you!

ydshieh

@KMFODA Thank you for all the efforts and patience to address all the comments!

This PR is ready to merge (after fixing code quality), just waiting @patrickvonplaten to give the final approval 💯.

(run the tests twice: all passed)

src/transformers/models/longformer/modeling_longformer.py

patrickvonplaten

Good to merge for me once the make quality test passes :-)

Co-authored-by: Yih-Dar <2521628+ydshieh@users.noreply.github.com>

KMFODA · 2022-05-17T00:41:28Z

No problem at all. Thanks for all the helpful comments. Changes made :).

patrickvonplaten · 2022-05-17T16:32:08Z

Thanks a mille for all your work here @KMFODA !

commit 5419205 Author: Patrick von Platen <patrick.v.platen@gmail.com> Date: Thu May 19 23:46:26 2022 +0200 [Test OPT] Add batch generation test opt (huggingface#17359) * up * up commit 48c2269 Author: ddobokki <44228269+ddobokki@users.noreply.github.com> Date: Fri May 20 05:42:44 2022 +0900 Fix bug in Wav2Vec2 pretrain example (huggingface#17326) commit 5d6feec Author: Nathan Dahlberg <58701810+nadahlberg@users.noreply.github.com> Date: Thu May 19 16:21:19 2022 -0400 fix for 17292 (huggingface#17293) commit 518bd02 Author: Patrick von Platen <patrick.v.platen@gmail.com> Date: Thu May 19 22:17:02 2022 +0200 [Generation] Fix Transition probs (huggingface#17311) * [Draft] fix transition probs * up * up * up * make it work * fix * finish * update commit e8714c0 Author: Patrick von Platen <patrick.v.platen@gmail.com> Date: Thu May 19 22:15:36 2022 +0200 [OPT] Run test in lower precision on GPU (huggingface#17353) * [OPT] Run test only in half precision * up * up * up * up * finish * fix on GPU * Update tests/models/opt/test_modeling_opt.py commit 2b28229 Author: Nicolas Patry <patry.nicolas@protonmail.com> Date: Thu May 19 20:28:12 2022 +0200 Adding `batch_size` test to QA pipeline. (huggingface#17330) commit a4386d7 Author: Nicolas Patry <patry.nicolas@protonmail.com> Date: Thu May 19 10:29:16 2022 +0200 [BC] Fixing usage of text pairs (huggingface#17324) * [BC] Fixing usage of text pairs The BC is actually preventing users from misusing the pipeline since users could have been willing to send text pairs and the pipeline would instead understand the thing as a batch returning bogus results. The correct usage of text pairs is preserved in this PR even when that makes the code clunky. Adds support for {"text":..,, "text_pair": ...} inputs for both dataset iteration and more explicit usage to pairs. * Updating the doc. * Update src/transformers/pipelines/text_classification.py Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> * Update src/transformers/pipelines/text_classification.py Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> * Update tests/pipelines/test_pipelines_text_classification.py Co-authored-by: Lysandre Debut <lysandre@huggingface.co> * quality. Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> Co-authored-by: Lysandre Debut <lysandre@huggingface.co> commit 3601aa8 Author: Stas Bekman <stas00@users.noreply.github.com> Date: Wed May 18 16:00:47 2022 -0700 [tests] fix copy-n-paste error (huggingface#17312) * [tests] fix copy-n-paste error * fix commit 1b20c97 Author: Yih-Dar <2521628+ydshieh@users.noreply.github.com> Date: Wed May 18 21:49:08 2022 +0200 Fix ci_url might be None (huggingface#17332) * fix * Update utils/notification_service.py Co-authored-by: Lysandre Debut <lysandre.debut@reseau.eseo.fr> Co-authored-by: ydshieh <ydshieh@users.noreply.github.com> Co-authored-by: Lysandre Debut <lysandre.debut@reseau.eseo.fr> commit 6aad387 Author: Yih-Dar <2521628+ydshieh@users.noreply.github.com> Date: Wed May 18 21:26:44 2022 +0200 fix (huggingface#17337) Co-authored-by: ydshieh <ydshieh@users.noreply.github.com> commit 1762ded Author: Zachary Mueller <muellerzr@gmail.com> Date: Wed May 18 14:17:40 2022 -0400 Fix metric calculation in examples and setup tests to run on multi-gpu for no_trainer scripts (huggingface#17331) * Fix length in no_trainer examples * Add setup and teardown * Use new accelerator config generator to automatically make tests able to run based on environment commit 6e195eb Author: Jader Martins <jadermcs@users.noreply.github.com> Date: Wed May 18 14:18:43 2022 -0300 docs for typical decoding (huggingface#17186) Co-authored-by: Jader Martins <jadermcs94@gmail.com> commit 060fe61 Author: Yih-Dar <2521628+ydshieh@users.noreply.github.com> Date: Wed May 18 19:07:48 2022 +0200 Not send successful report (huggingface#17329) * send report only if there is any failure Co-authored-by: ydshieh <ydshieh@users.noreply.github.com> commit b3b9f99 Author: Yih-Dar <2521628+ydshieh@users.noreply.github.com> Date: Wed May 18 17:57:23 2022 +0200 Fix test_t5_decoder_model_past_large_inputs (huggingface#17320) Co-authored-by: ydshieh <ydshieh@users.noreply.github.com> commit 6da76b9 Author: Jingya HUANG <44135271+JingyaHuang@users.noreply.github.com> Date: Wed May 18 17:52:13 2022 +0200 Add onnx export cuda support (huggingface#17183) Co-authored-by: Lysandre Debut <lysandre@huggingface.co> Co-authored-by: lewtun <lewis.c.tunstall@gmail.com> commit adc0ff2 Author: NielsRogge <48327001+NielsRogge@users.noreply.github.com> Date: Wed May 18 17:47:18 2022 +0200 Add CvT (huggingface#17299) * Adding cvt files * Adding cvt files * changes in init file * Adding cvt files * changes in init file * Style fixes * Address comments from code review * Apply suggestions from code review Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> * Format lists in docstring * Fix copies * Apply suggestion from code review Co-authored-by: AnugunjNaman <anugunjjha@gmail.com> Co-authored-by: Ayushman Singh <singhayushman13@protonmail.com> Co-authored-by: Niels Rogge <nielsrogge@Nielss-MacBook-Pro.local> Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> commit 4710702 Author: Sylvain Gugger <Sylvain.gugger@gmail.com> Date: Wed May 18 10:46:40 2022 -0400 Fix style commit 5fdb54e Author: mraunak <83710963+mraunak@users.noreply.github.com> Date: Wed May 18 10:39:02 2022 -0400 Add Information Gain Filtration algorithm (huggingface#16953) * Add information gain filtration algorithm * Complying with black requirements * Added author * Fixed import order * flake8 corrections Co-authored-by: Javier Turek <javier.turek@intel.com> commit 91ede48 Author: Kamal Raj <kamalraj97@gmail.com> Date: Wed May 18 19:59:53 2022 +0530 Fix typo (huggingface#17328) commit fe28eb9 Author: Yih-Dar <2521628+ydshieh@users.noreply.github.com> Date: Wed May 18 16:06:41 2022 +0200 remove (huggingface#17325) Co-authored-by: ydshieh <ydshieh@users.noreply.github.com> commit 2cb2ea3 Author: Nicolas Patry <patry.nicolas@protonmail.com> Date: Wed May 18 16:06:24 2022 +0200 Accepting real pytorch device as arguments. (huggingface#17318) * Accepting real pytorch device as arguments. * is_torch_available. commit 1c9d1f4 Author: Nicolas Patry <patry.nicolas@protonmail.com> Date: Wed May 18 15:46:12 2022 +0200 Updating the docs for `max_seq_len` in QA pipeline (huggingface#17316) commit 60ad734 Author: Patrick von Platen <patrick.v.platen@gmail.com> Date: Wed May 18 15:08:56 2022 +0200 [T5] Fix init in TF and Flax for pretraining (huggingface#17294) * fix init * Apply suggestions from code review * fix * finish * Update src/transformers/modeling_tf_utils.py Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> commit 7ba1d4e Author: Joaq <55513213+jQuinRivero@users.noreply.github.com> Date: Wed May 18 09:23:47 2022 -0300 Add type hints for ProphetNet (Pytorch) (huggingface#17223) * added type hints to prophetnet * reformatted with black * fix bc black misformatted some parts * fix imports * fix imports * Update src/transformers/models/prophetnet/configuration_prophetnet.py Co-authored-by: Matt <Rocketknight1@users.noreply.github.com> * update OPTIONAL type hint and docstring Co-authored-by: Matt <Rocketknight1@users.noreply.github.com> commit d6b8e9c Author: Carl <carl.cochet@gmail.com> Date: Wed May 18 01:07:43 2022 +0200 Add trajectory transformer (huggingface#17141) * Add trajectory transformer Fix model init Fix end of lines for .mdx files Add trajectory transformer model to toctree Add forward input docs Fix docs, remove prints, simplify prediction test Apply suggestions from code review Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> Apply suggestions from code review Co-authored-by: Lysandre Debut <lysandre@huggingface.co> Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> Update docs, more descriptive comments Apply suggestions from code review Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> Update readme Small comment update and add conversion script Rebase and reformat Fix copies Fix rebase, remove duplicates Fix rebase, remove duplicates * Remove tapex * Remove tapex * Remove tapex commit c352640 Author: Patrick von Platen <patrick.v.platen@gmail.com> Date: Wed May 18 00:34:31 2022 +0200 fix (huggingface#17310) commit d9050dc Author: Cesare Campagnano <cesare.campagnano@gmail.com> Date: Tue May 17 23:44:37 2022 +0200 [LED] fix global_attention_mask not being passed for generation and docs clarification about grad checkpointing (huggingface#17112) * [LED] fixed global_attention_mask not passed for generation + docs clarification for gradient checkpointing * LED docs clarification Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com> * [LED] gradient_checkpointing=True should be passed to TrainingArguments Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com> * [LED] docs: remove wrong word Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com> * [LED] docs fix typo Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com> Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com> commit bad3583 Author: Jean Vancoppenolle <jean.vcop@gmail.com> Date: Tue May 17 23:42:14 2022 +0200 Add support for pretraining recurring span selection to Splinter (huggingface#17247) * Add SplinterForSpanSelection for pre-training recurring span selection. * Formatting. * Rename SplinterForSpanSelection to SplinterForPreTraining. * Ensure repo consistency * Fixup changes * Address SplinterForPreTraining PR comments * Incorporate feedback and derive multiple question tokens per example. * Update src/transformers/models/splinter/modeling_splinter.py Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com> * Update src/transformers/models/splinter/modeling_splinter.py Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com> Co-authored-by: Jean Vancoppenole <jean.vancoppenolle@retresco.de> Co-authored-by: Tobias Günther <tobias.guenther@retresco.de> Co-authored-by: Tobias Günther <github@tobigue.de> Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com> commit 0511305 Author: Yih-Dar <2521628+ydshieh@users.noreply.github.com> Date: Tue May 17 18:56:58 2022 +0200 Add PR author in CI report + merged by info (huggingface#17298) * Add author info to CI report * Add merged by info * update Co-authored-by: ydshieh <ydshieh@users.noreply.github.com> commit 032d63b Author: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> Date: Tue May 17 12:56:24 2022 -0400 Fix dummy creation script (huggingface#17304) commit 986dd5c Author: Sylvain Gugger <Sylvain.gugger@gmail.com> Date: Tue May 17 12:50:14 2022 -0400 Fix style commit 38ddab1 Author: Karim Foda <35491698+KMFODA@users.noreply.github.com> Date: Tue May 17 09:32:12 2022 -0700 Doctest longformer (huggingface#16441) * Add initial doctring changes * make fixup * Add TF doc changes * fix seq classifier output * fix quality errors * t * swithc head to random init * Fix expected outputs * Update src/transformers/models/longformer/modeling_longformer.py Co-authored-by: Yih-Dar <2521628+ydshieh@users.noreply.github.com> Co-authored-by: Yih-Dar <2521628+ydshieh@users.noreply.github.com> commit 10704e1 Author: Patrick von Platen <patrick.v.platen@gmail.com> Date: Tue May 17 18:20:36 2022 +0200 [Test] Fix W2V-Conformer integration test (huggingface#17303) * [Test] Fix W2V-Conformer integration test * correct w2v2 * up commit 28a0811 Author: regisss <15324346+regisss@users.noreply.github.com> Date: Tue May 17 17:58:14 2022 +0200 Improve mismatched sizes management when loading a pretrained model (huggingface#17257) - Add --ignore_mismatched_sizes argument to classification examples - Expand the error message when loading a model whose head dimensions are different from expected dimensions commit 1f13ba8 Author: Patrick von Platen <patrick.v.platen@gmail.com> Date: Tue May 17 15:48:23 2022 +0200 correct opt (huggingface#17301) commit 349f1c8 Author: Matt <Rocketknight1@users.noreply.github.com> Date: Tue May 17 14:36:23 2022 +0100 Rewrite TensorFlow train_step and test_step (huggingface#17057) * Initial commit * Better label renaming * Remove breakpoint before pushing (this is your job) * Test a lot more in the Keras fit() test * make fixup * Clarify the case where we flatten y dicts into tensors * Clarify the case where we flatten y dicts into tensors * Extract label name remapping to a method commit 651e48e Author: Matt <Rocketknight1@users.noreply.github.com> Date: Tue May 17 14:14:17 2022 +0100 Fix tests of mixed precision now that experimental is deprecated (huggingface#17300) * Fix tests of mixed precision now that experimental is deprecated * Fix mixed precision in training_args_tf.py too commit 6d21142 Author: SaulLu <55560583+SaulLu@users.noreply.github.com> Date: Tue May 17 14:33:13 2022 +0200 fix retribert's `test_torch_encode_plus_sent_to_model` (huggingface#17231)

* Add initial doctring changes * make fixup * Add TF doc changes * fix seq classifier output * fix quality errors * t * swithc head to random init * Fix expected outputs * Update src/transformers/models/longformer/modeling_longformer.py Co-authored-by: Yih-Dar <2521628+ydshieh@users.noreply.github.com> Co-authored-by: Yih-Dar <2521628+ydshieh@users.noreply.github.com>

KMFODA added 2 commits March 27, 2022 17:25

Add initial doctring changes

1f14e25

make fixup

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Merge branch 'main' into doctest-longformer

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merge main

Add TF doc changes

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KMFODA added 4 commits May 3, 2022 09:11

fix seq classifier output

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Merge branch 'main' into doctest-longformer

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fix quality errors

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swithc head to random init

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Merge remote-tracking branch 'origin/master' into doctest-longformer

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Fix expected outputs

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Update src/transformers/models/longformer/modeling_longformer.py

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patrickvonplaten merged commit 38ddab1 into huggingface:main May 17, 2022

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[Fix-copies] Correct main fix-copies #17310

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Add canine in documentation_tests_file #18225

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Doctest longformer #16441

Doctest longformer #16441

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		@@ -1407,6 +1407,28 @@ def _set_gradient_checkpointing(self, module, value=False):
		module.gradient_checkpointing = value


		LONGFORMER_GENERATION_DOCSTRING = r"""

Doctest longformer #16441

Doctest longformer #16441

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KMFODA commented Mar 28, 2022

What does this PR do?

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