Change_internal_structure #391

Workflow file for this run

	# This is a basic workflow to help you get started with Actions

	name: CI

	# Controls when the action will run.
	on:
	# Triggers the workflow on push or pull request events but only for the master branch

	pull_request:
	branches: [main]

	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:

	# # Run tests every month
	# schedule:
	# - cron: '0 0 1 * *'

	# A workflow run is made up of one or more jobs that can run sequentially or in parallel
	jobs:
	# This workflow contains a single job called "build"
	linux:
	# The type of runner that the job will run on
	runs-on: ubuntu-latest
	strategy:
	matrix:
	include:
	- name: "Ubuntu OpenMPI g++"
	CC_COMPILER: gcc
	CXX_COMPILER: g++
	container: "ubuntu_gcc_openmpi"
	MPIEXEC_PREFLAGS: "--allow-run-as-root --oversubscribe"
	USE_SANITIZER: ""
	# ASAN_OPTIONS: "ASAN_OPTIONS=detect_leaks=0" # issue probably with openmpi
	CMAKE_BUILD_TYPE: Debug
	CODE_COVERAGE: "OFF"
	DOCKER_OPTIONS: "--cap-add SYS_PTRACE"

	- name: "Ubuntu OpenMPI clang++"
	CC_COMPILER: clang
	CXX_COMPILER: clang++
	container: "ubuntu_clang_openmpi"
	MPIEXEC_PREFLAGS: "--allow-run-as-root --oversubscribe"
	USE_SANITIZER: ""
	CMAKE_BUILD_TYPE: Debug
	CODE_COVERAGE: "OFF"
	DOCKER_OPTIONS: "--cap-add SYS_PTRACE"

	- name: "Ubuntu MPICH g++"
	CC_COMPILER: gcc
	CXX_COMPILER: g++
	container: "ubuntu_gcc_mpich"
	MPIEXEC_PREFLAGS: ""
	USE_SANITIZER: "Address"
	ASAN_OPTIONS: ""
	CMAKE_BUILD_TYPE: Debug
	DOCKER_OPTIONS: " "
	CODE_COVERAGE: "ON"

	- name: "Ubuntu MPICH clang++"
	CC_COMPILER: clang
	CXX_COMPILER: clang++
	container: "ubuntu_clang_mpich"
	MPIEXEC_PREFLAGS: ""
	USE_SANITIZER: "Address"
	ASAN_OPTIONS: ""
	CMAKE_BUILD_TYPE: Debug
	DOCKER_OPTIONS: " "
	CODE_COVERAGE: "OFF"

	# Hangs up on github
	- name: "Debian OpenMPI g++"
	CC_COMPILER: gcc
	CXX_COMPILER: g++
	container: "debian_gcc_openmpi"
	MPIEXEC_PREFLAGS: "--allow-run-as-root --oversubscribe"
	USE_SANITIZER: ""
	# ASAN_OPTIONS: "ASAN_OPTIONS=detect_leaks=0" # issue probably with openmpi
	CMAKE_BUILD_TYPE: Debug
	CODE_COVERAGE: "OFF"
	DOCKER_OPTIONS: "--cap-add SYS_PTRACE"

	- name: "Debian OpenMPI clang++"
	CC_COMPILER: clang
	CXX_COMPILER: clang++
	container: "debian_clang_openmpi"
	MPIEXEC_PREFLAGS: "--allow-run-as-root --oversubscribe"
	USE_SANITIZER: ""
	CMAKE_BUILD_TYPE: Debug
	CODE_COVERAGE: "OFF"
	DOCKER_OPTIONS: "--cap-add SYS_PTRACE"

	- name: "Debian MPICH g++"
	CC_COMPILER: gcc
	CXX_COMPILER: g++
	container: "debian_gcc_mpich"
	MPIEXEC_PREFLAGS: ""
	USE_SANITIZER: "Address"
	ASAN_OPTIONS: ""
	CMAKE_BUILD_TYPE: Debug
	DOCKER_OPTIONS: " "
	CODE_COVERAGE: "OFF"

	- name: "Debian MPICH clang++"
	CC_COMPILER: clang
	CXX_COMPILER: clang++
	container: "debian_clang_mpich"
	MPIEXEC_PREFLAGS: ""
	USE_SANITIZER: "Address"
	ASAN_OPTIONS: ""
	CMAKE_BUILD_TYPE: Debug
	DOCKER_OPTIONS: " "
	CODE_COVERAGE: "OFF"

	container:
	image: pierremarchand/htool_testing_environments:${{ matrix.container }}
	options: --user root ${{ matrix.DOCKER_OPTIONS }}
	env:
	OMPI_CC: ${{ matrix.CC_COMPILER }}
	OMPI_CXX: ${{ matrix.CXX_COMPILER }}
	CC: ${{ matrix.CC_COMPILER }}
	CXX: ${{ matrix.CXX_COMPILER }}

	name: CI (${{ matrix.name }})

	# Steps represent a sequence of tasks that will be executed as part of the job
	steps:
	- name: Checkout htool
	uses: actions/checkout@v3
	with:
	path: "htool"
	# ref: 14d013835eceb940b9b51dd90462fe67834db777
	fetch-depth: 0 # to get tags
	- name: Checkout hpddm
	run: \|
	git clone https://github.com/hpddm/hpddm.git hpddm
	cd hpddm && git checkout 5890d5addf3962d539dc25c441ec3ff4af93b3ab
	# uses: actions/checkout@v3
	# with:
	# path: "hpddm"
	# repository: hpddm/hpddm
	# ref: afb9562c9c6673d9ff760985b104ef8d4caa3621

	- name: Activate virtualenv
	run: \|
	. /usr/local/share/venv/bin/activate
	echo PATH=$PATH >> $GITHUB_ENV

	- name: Build tests
	run: \|
	cd htool && mkdir build && cd build
	cmake -DHTOOL_WITH_EXAMPLES=ON -DHTOOL_WITH_DOC=ON -DHTOOL_WITH_STRICT_TESTS=ON -DMPIEXEC_PREFLAGS="${{ matrix.MPIEXEC_PREFLAGS }}" -DUSE_SANITIZER=${{ matrix.USE_SANITIZER }} -DCMAKE_BUILD_TYPE=${{ matrix.CMAKE_BUILD_TYPE }} -DCODE_COVERAGE=${{ matrix.CODE_COVERAGE }} ../
	make -j 4 build-tests

	- name: Run tests
	run: \|
	cd htool/build
	export OMP_NUM_THREADS=2
	${{ matrix.ASAN_OPTIONS }} ctest -j 4 --output-on-failure

	- name: Build examples
	run: \|
	cd htool/build
	make -j 4 build-examples

	- name: Build documentation
	run: \|
	cd htool/build
	make doc

	- name: Check c++ format
	uses: DoozyX/clang-format-lint-action@v0.16.2
	with:
	source: 'htool/include htool/tests'
	# exclude: './third_party ./external'
	extensions: 'hpp,cpp'
	clangFormatVersion: 16
	style: file

	- name: Check cmake format
	run: \|
	. /usr/local/share/venv/bin/activate
	cd htool/build
	make cmake-format
	git diff --exit-code

	- name: Generate coverage reports
	if: matrix.CODE_COVERAGE == 'ON'
	run: \|
	cd htool/
	lcov --capture --base-directory ./ --directory build/ --output-file coverage.info
	lcov --remove coverage.info '/usr/' '/hpddm/*' --output-file ../coverage.info

	- uses: actions/upload-artifact@v4
	with:
	path: coverage.info
	if-no-files-found: error
	if: matrix.CODE_COVERAGE == 'ON'

	# - name: Upload coverage to Codecov
	# if: matrix.CODE_COVERAGE == 'ON'
	# uses: codecov/codecov-action@v4.5.0
	# with:
	# fail_ci_if_error: true
	# files: htool/coverage.info
	# token: ${{ secrets.CODECOV_TOKEN }}
	# verbose: true

	coverage:
	runs-on: ubuntu-latest
	if: ${{ success() }}
	needs: [ linux ]
	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- uses: actions/download-artifact@v4
	- name: Upload coverage report
	uses: codecov/codecov-action@v4
	with:
	fail_ci_if_error: true
	file: ./coverage.info
	token: ${{ secrets.CODECOV_TOKEN }}
	verbose: true

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Change_internal_structure #391

Workflow file

Change_internal_structure #391

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Workflow file for this run