pqtl_locuszoom

Regional association plot of the signals in the pQTL project

Input preparation

To inform the pipeline which regions to plot, please consider similar data structure as locus breaker results (esp. for pQTL Fine-mapping pipe users). Otherwise, a comma-separated file need to be created by the user requiring these columns respecting exact headers:

• chr
• start
• end
• SNPID
• MLOG10P in GWAS

Options

There are some options in the config:

• show_recomb: TRUE/FALSE --> FALSE skips showing the recombination line.
• build: hg37/hg38 --> genomic build of the variants' coordinates [to be completed]