ht-diva / pqtl-believe-interval Public

Working space for Believe Interval projects analysis

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Name		Name	Last commit message	Last commit date
Latest commit History 144 Commits
Prot-pheno_association		Prot-pheno_association
cis-trans-tagging		cis-trans-tagging
cond_analysis		cond_analysis
gwas_scripts		gwas_scripts
qq_manhattan		qq_manhattan
residuals		residuals
somalogic_mapping		somalogic_mapping
.gitignore		.gitignore
Cleaning_proteomics_BELIEVE.R		Cleaning_proteomics_BELIEVE.R
Cleaning_proteomics_INTERVAL.R		Cleaning_proteomics_INTERVAL.R
Comparisons_2_conditions_on_test_targets.R		Comparisons_2_conditions_on_test_targets.R
Definition of independent test via PCA.R		Definition of independent test via PCA.R
GT_BELIEVE_subset_to_remove_het.txt		GT_BELIEVE_subset_to_remove_het.txt
GT_BELIEVE_whole_to_remove_het.txt		GT_BELIEVE_whole_to_remove_het.txt
LocusZoom_from_raw_data_initialscript.R		LocusZoom_from_raw_data_initialscript.R
PEER_BELIEVE.R		PEER_BELIEVE.R
Prepare_pheno_tests_restricted_corrected.R		Prepare_pheno_tests_restricted_corrected.R
Prot_PCA_BELIEVE.R		Prot_PCA_BELIEVE.R
QC_genetic_BELIEVE.R		QC_genetic_BELIEVE.R
QC_interval_proteomics.R		QC_interval_proteomics.R
README.md		README.md
Script_QC_INTERVAL_genomics.R		Script_QC_INTERVAL_genomics.R
clump_plink.sh		clump_plink.sh
clump_plink_test_fastgwas.sh		clump_plink_test_fastgwas.sh
clump_plink_test_regenie.sh		clump_plink_test_regenie.sh
extract_gene_OUTDATED.R		extract_gene_OUTDATED.R
extract_gene_OUTDATED_sept2023.R		extract_gene_OUTDATED_sept2023.R
function_make_boxplots.R		function_make_boxplots.R
plots		plots
prep_pheno.R		prep_pheno.R