Merge pull request #4 from ht-diva/ghactions

github action for testing

.github/workflows/test.yml

@@ -0,0 +1,31 @@
+name: test
+
+on: [push,pull_request]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10"]
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - uses: conda-incubator/setup-miniconda@v3
+        with:
+          activate-environment: gwasstudio
+          environment-file: environment.yml
+          auto-update-conda: true
+          auto-activate-base: false
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install the project
+        shell: bash -el {0}
+        run: make install
+
+      - name: Test version
+        shell: bash -el {0}
+        run: gwasstudio --version

environment.yml

@@ -12,8 +12,3 @@ dependencies:
   - pip  # pip must be mentioned explicitly, or conda-lock will fail
   - poetry=1.*  # or 1.1.*, or no version at all -- as you want
   - tiledb::tiledbvcf-py=0.26.*
-
-# Non-standard section listing target platforms for conda-lock:
-platforms:
-  - linux-64
-  - osx-arm64

main.py → gwasstudio/main.py

@@ -79,7 +79,7 @@ def cli_init(
             cpu_workers=cpu_workers,
         ).get_client()
         ctx.obj["client"] = client
-        #logger.info("Dask dashboard available at {}".format(client.get_dashboard()))
+        # logger.info("Dask dashboard available at {}".format(client.get_dashboard()))
 
 
 def main():