modify export

ht-diva · Oct 31, 2024 · 7ce73f6 · 7ce73f6
1 parent eaaa82f
commit 7ce73f6
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Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/gwasstudio/cli/export.py b/gwasstudio/cli/export.py
@@ -2,9 +2,8 @@
 import cloup
 from gwasstudio import logger
 from gwasstudio.methods.locus_breaker import locus_breaker
-from gwasstudio.methods.extract_snp import extract_snp
 from scipy import stats
-
+print("starting export")
 help_doc = """
 Exports data from a TileDB dataset.
 """
@@ -13,7 +12,7 @@
 @cloup.command("export", no_args_is_help=True, help=help_doc)
 @cloup.option_group(
     "TileDB mandatory options",
-    cloup.option("--uri", default="None", help="TileDB-VCF dataset URI"),
+    cloup.option("--uri", default="None", help="TileDB dataset URI"),
     cloup.option("--chromosome", default="None", help="The chromosome used for the analysis"),
     cloup.option("--trait_id_file", default="None", help="The chromosome used for the analysis"),
 )

diff --git a/gwasstudio/main.py b/gwasstudio/main.py
@@ -5,7 +5,6 @@
 
 from gwasstudio.cli.export import export
 from gwasstudio.cli.info import info
-
 from gwasstudio.cli.ingest import ingest
 from gwasstudio.cli.query import query
 from gwasstudio.dask_client import DaskClient as Client