Refactor names and arguments

[hsloot]

Related issues

None

Checklist

• R CMD CHECK successful
• Tests included
• Documentation included or updated
• Commit messages follow commit guidelines

Optional, but recommended:

• Code passes lintr::lint_package() without errors

Description

Proposed changes:

• Rename S4-method exIntensities() to calcExShockSizeArrivalIntensities() and arguments/variables ex_intensities to theta
• Rename S4-method uexIntensities() to calcExShockArrivalIntensities()
• Rename S4-method exQMatrix() to calcMDCMGeneratorMatrix()
• Rename S4-method intensities() to calcShockArrivalIntensities()
• Rename S4-method defaultMethod() to getDefaultMethodString()
• Rename S4-method levyDensity() to getLevyDensity()
• Rename S4-method stieltjesDensity() to getStieltjesDensity()
• Rename S4-method valueOf() to calcIterativeDifference()
• Rename S4-method valueOf0() to calcValue()

[codecov]

Codecov Report

Attention: Patch coverage is 64.77273% with 31 lines in your changes are missing coverage. Please review.

Project coverage is 93.49%. Comparing base (188b25a) to head (1c03c8d).
Report is 25 commits behind head on main.

❗ Current head 1c03c8d differs from pull request most recent head fd74c95. Consider uploading reports for the commit fd74c95 to get more accurate results

Files	Patch %	Lines
R/rmo-deprecated.R	0.00%	29 Missing ⚠️
R/s4-LevyBernsteinFunction.R	77.77%	2 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #121      +/-   ##
==========================================
- Coverage   95.85%   93.49%   -2.36%     
==========================================
  Files          55       56       +1     
  Lines        1399     1446      +47     
==========================================
+ Hits         1341     1352      +11     
- Misses         58       94      +36     

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