Week1

CMEE coursework for week one covering unix, shell scripting, version control with git and scientific documents with LaTex.

Contents

Unix

• UnixPrac1.txt
  • Single line UNIX shell commands for FASTA files.

Shell scripting

• boilerplate.sh
  • First shell script ever!
• tabtocsv.sh
  • A useful script substituting all tabs with commas.
• variables.sh
  • An exploration in assigning values to variables.
• MyExampleScript.sh
  • An extention of 2.3.
• CountLines.sh
  • A script to count the lines in a given file.
• ConcateTwoFiles.sh
  • Merging files.
• tiff2png.sh
  • Converts tiff images to png format
• csvtospace.sh
  • Converts comma seperated values to space seperated values.

Scientific Documents with LaTex

• FirstExample.tex
  • Input TeX document.
• FirstBiblio.bib
  • Input bibliography pulled from google scholar
• ComplileLaTex.sh
  • A shell script to compile latex with bibtex.

Authors

• Hannah O'Sullivan

License

I don't have one

Acknowledgments

• Thank you to Samraat for being our Obi-Wan