Week1

CMEE coursework for week one covering unix, shell scripting, version control with git and scientific documents with LaTex.

Contents

Unix

UnixPrac1.txt
- Single line UNIX shell commands for FASTA files.

Shell scripting

boilerplate.sh
- First shell script ever!
tabtocsv.sh
- A useful script substituting all tabs with commas.
variables.sh
- An exploration in assigning values to variables.
MyExampleScript.sh
- An extention of 2.3.
CountLines.sh
- A script to count the lines in a given file.
ConcateTwoFiles.sh
- Merging files.
tiff2png.sh
- Converts tiff images to png format
csvtospace.sh
- Converts comma seperated values to space seperated values.

Scientific Documents with LaTex

FirstExample.tex
- Input TeX document.
FirstBiblio.bib
- Input bibliography pulled from google scholar
ComplileLaTex.sh
- A shell script to compile latex with bibtex.

Authors

Hannah O'Sullivan

License

I don't have one

Acknowledgments

Thank you to Samraat for being our Obi-Wan