Migrate gh-pages from API-docs to jekyll site

.gitignore

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+Gemfile.lock
+test/dest
+*.gem
+pkg/
+*.swp
+*~
+_site/
+.bundle/
+.DS_Store
+bbin/
+gh-pages/
+site/_site/
+coverage
+.ruby-version
+.ruby-gemset
+.sass-cache
+tmp/*
+.jekyll-metadata
+/vendor
+/test/source/file_name.txt

_config.yml

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+# Site settings
+title: EQcorrscan
+email: calum.chamberlain@vuw.ac.nz
+description: > # this means to ignore newlines until "baseurl:"
+  Multi-paralleled matched-filter earthquake detection and analysis
+  for large-scale continuous seismic datasets containing repeating and
+  near-repeating earthquakes.
+github_username:  calum-chamberlain
+
+# Build settings
+markdown: kramdown
+highlighter: pygments

_includes/footer.html

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+<footer class="site-footer">
+
+  <div class="wrapper">
+
+    <h2 class="footer-heading">{{ site.title }}</h2>
+
+    <div class="footer-col-wrapper">
+      <div class="footer-col  footer-col-1">
+        <ul class="contact-list">
+          <li>{{ site.title }}</li>
+          <li><a href="mailto:{{ site.email }}">{{ site.email }}</a></li>
+        </ul>
+      </div>
+
+      <div class="footer-col  footer-col-2">
+        <ul class="social-media-list">
+          {% if site.github_username %}
+          <li>
+            <a href="https://github.com/{{ site.github_username }}">
+              <span class="icon  icon--github">
+                <svg viewBox="0 0 16 16">
+                  <path fill="#828282" d="M7.999,0.431c-4.285,0-7.76,3.474-7.76,7.761 c0,3.428,2.223,6.337,5.307,7.363c0.388,0.071,0.53-0.168,0.53-0.374c0-0.184-0.007-0.672-0.01-1.32 c-2.159,0.469-2.614-1.04-2.614-1.04c-0.353-0.896-0.862-1.135-0.862-1.135c-0.705-0.481,0.053-0.472,0.053-0.472 c0.779,0.055,1.189,0.8,1.189,0.8c0.692,1.186,1.816,0.843,2.258,0.645c0.071-0.502,0.271-0.843,0.493-1.037 C4.86,11.425,3.049,10.76,3.049,7.786c0-0.847,0.302-1.54,0.799-2.082C3.768,5.507,3.501,4.718,3.924,3.65 c0,0,0.652-0.209,2.134,0.796C6.677,4.273,7.34,4.187,8,4.184c0.659,0.003,1.323,0.089,1.943,0.261 c1.482-1.004,2.132-0.796,2.132-0.796c0.423,1.068,0.157,1.857,0.077,2.054c0.497,0.542,0.798,1.235,0.798,2.082 c0,2.981-1.814,3.637-3.543,3.829c0.279,0.24,0.527,0.713,0.527,1.437c0,1.037-0.01,1.874-0.01,2.129 c0,0.208,0.14,0.449,0.534,0.373c3.081-1.028,5.302-3.935,5.302-7.362C15.76,3.906,12.285,0.431,7.999,0.431z"/>
+                </svg>
+              </span>
+
+              <span class="username">{{ site.github_username }}</span>
+            </a>
+          </li>
+          {% endif %}
+
+          {% if site.twitter_username %}
+          <li>
+            <a href="https://twitter.com/{{ site.twitter_username }}">
+              <span class="icon  icon--twitter">
+                <svg viewBox="0 0 16 16">
+                  <path fill="#828282" d="M15.969,3.058c-0.586,0.26-1.217,0.436-1.878,0.515c0.675-0.405,1.194-1.045,1.438-1.809
+                  c-0.632,0.375-1.332,0.647-2.076,0.793c-0.596-0.636-1.446-1.033-2.387-1.033c-1.806,0-3.27,1.464-3.27,3.27 c0,0.256,0.029,0.506,0.085,0.745C5.163,5.404,2.753,4.102,1.14,2.124C0.859,2.607,0.698,3.168,0.698,3.767 c0,1.134,0.577,2.135,1.455,2.722C1.616,6.472,1.112,6.325,0.671,6.08c0,0.014,0,0.027,0,0.041c0,1.584,1.127,2.906,2.623,3.206 C3.02,9.402,2.731,9.442,2.433,9.442c-0.211,0-0.416-0.021-0.615-0.059c0.416,1.299,1.624,2.245,3.055,2.271 c-1.119,0.877-2.529,1.4-4.061,1.4c-0.264,0-0.524-0.015-0.78-0.046c1.447,0.928,3.166,1.469,5.013,1.469 c6.015,0,9.304-4.983,9.304-9.304c0-0.142-0.003-0.283-0.009-0.423C14.976,4.29,15.531,3.714,15.969,3.058z"/>
+                </svg>
+              </span>
+
+              <span class="username">{{ site.twitter_username }}</span>
+            </a>
+          </li>
+          {% endif %}
+        </ul>
+      </div>
+
+      <div class="footer-col  footer-col-3">
+        <p class="text">{{ site.description }}</p>
+      </div>
+    </div>
+
+  </div>
+
+</footer>

_includes/google_analytics.html

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+<script>
+  (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
+  (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
+  m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
+  })(window,document,'script','//www.google-analytics.com/analytics.js','ga');
+
+  ga('create', 'UA-70443540-1', 'auto');
+  ga('send', 'pageview');
+
+</script>

_includes/head.html

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+<head>
+    <meta charset="utf-8">
+    <meta name="viewport" content="width=device-width initial-scale=1" />
+    <meta http-equiv="X-UA-Compatible" content="IE=edge">
+
+    <title>{% if page.title %}{{ page.title }}{% else %}{{ site.title }}{% endif %}</title>
+    <meta name="description" content="{{ site.description }}">
+
+    <link rel="stylesheet" href="{{ "/css/main.css" | prepend: site.baseurl }}">
+    <link rel="canonical" href="{{ page.url | replace:'index.html','' | prepend: site.baseurl | prepend: site.url }}">
+</head>

_includes/header.html

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+<header class="site-header">
+
+  <div class="wrapper">
+
+    <a class="site-title" href="{{ site.baseurl }}/">{{ site.title }}</a>
+
+    <nav class="site-nav">
+      <a href="#" class="menu-icon">
+        <svg viewBox="0 0 18 15">
+          <path fill="#424242" d="M18,1.484c0,0.82-0.665,1.484-1.484,1.484H1.484C0.665,2.969,0,2.304,0,1.484l0,0C0,0.665,0.665,0,1.484,0 h15.031C17.335,0,18,0.665,18,1.484L18,1.484z"/>
+          <path fill="#424242" d="M18,7.516C18,8.335,17.335,9,16.516,9H1.484C0.665,9,0,8.335,0,7.516l0,0c0-0.82,0.665-1.484,1.484-1.484 h15.031C17.335,6.031,18,6.696,18,7.516L18,7.516z"/>
+          <path fill="#424242" d="M18,13.516C18,14.335,17.335,15,16.516,15H1.484C0.665,15,0,14.335,0,13.516l0,0 c0-0.82,0.665-1.484,1.484-1.484h15.031C17.335,12.031,18,12.696,18,13.516L18,13.516z"/>
+        </svg>
+      </a>
+
+      <div class="trigger">
+        {% for page in site.pages %}
+          {% if page.title %}
+          <a class="page-link" href="{{ page.url | prepend: site.baseurl }}">{{ page.title }}</a>
+          {% endif %}
+        {% endfor %}
+      </div>
+    </nav>
+
+  </div>
+
+</header>

_includes/index.md

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+Welcome to EQcorrscan.
+
+These pages make up the general documentation of the EQcorrscan project, the
+full API can be found
+[here](http://eqcorrscan.readthedocs.org/en/latest/?badge=latest).  This project
+is an open source, Python project for the detection and analysis of repeating
+and near-repeating earthquakes.  The codes are hosted on
+[github](https://github.com/calum-chamberlain/EQcorrscan), with the latest
+release also available on [pypi](https://pypi.python.org/pypi/EQcorrscan/0.0.8).
+
+This project is in constant development, although the core routines are relatively
+stable.  Before we migrate to a 0.1.0 release we plan on implementing more tests
+and adapting the code to more pep8 friendly style (currently we mostly follow
+pep8 guidelines, but we are always learning!).
+
+You can find more details about the project on the [About](about) page, and
+details on how to install and update on the [Installation](Installation) page.

_layouts/default.html

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+<!DOCTYPE html>
+<html>
+
+  {% include head.html %}
+
+  <body>
+
+    {% include header.html %}
+
+    <div class="page-content">
+      <div class="wrapper">
+        {{ content }}
+      </div>
+    </div>
+
+    {% include footer.html %}
+    {% include google_analytics.html %}
+  </body>
+
+</html>

_layouts/page.html

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+---
+layout: default
+---
+<div class="post">
+
+  <header class="post-header">
+    <h1 class="post-title">{{ page.title }}</h1>
+  </header>
+
+  <article class="post-content">
+    {{ content }}
+  </article>
+
+</div>

_layouts/post.html

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+---
+layout: default
+---
+<div class="post">
+
+  <header class="post-header">
+    <h1 class="post-title">{{ page.title }}</h1>
+    <p class="post-meta">{{ page.date | date: "%b %-d, %Y" }}{% if page.author %} • {{ page.author }}{% endif %}{% if page.meta %} • {{ page.meta }}{% endif %}</p>
+  </header>
+
+  <article class="post-content">
+    {{ content }}
+  </article>
+
+</div>