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configure should honour --prefix now
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@hasindu2008
hasindu2008 committed Sep 26, 2024
1 parent fb06cee commit 78ddbbe
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2 changes: 1 addition & 1 deletion Makefile
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Expand Up @@ -38,7 +38,7 @@ OBJ_BIN = $(BUILD_DIR)/main.o \
$(BUILD_DIR)/degrade.o \


PREFIX = /usr/local
PREFIX ?= /usr/local
VERSION = `git describe --tags`

.PHONY: clean distclean format test install uninstall slow5lib
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1 change: 1 addition & 0 deletions config.mk.in
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@@ -1,6 +1,7 @@
LIBS = @LIBS@
LDFLAGS = @LDFLAGS@
CPPFLAGS = @CPPFLAGS@
PREFIX = @prefix@

HDF5 = @hdf_tar_install@

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8 changes: 4 additions & 4 deletions docs/datasets.md
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Expand Up @@ -25,7 +25,7 @@ An NA24385 R10.4.1 LSK114 dataset with ~40X coverage sequenced on a PromethION

| <sub>Description</sub> | <sub>ENA run Data access</sub> | <sub>Direct download link (md5sum)</sub> |
|------------------------------------------------------|------------------------------------------------------------------------------------------------------------|----------------------|
| <sub>chr22 reads subsubset (BLOW5 format)</sub> | | <sub>[PGXXSX240041_reads_chr22.blow5](https://slow5.bioinf.science/hg2_prom2_5khz_chr22)</sub> <sub>(``)</sub> |
| <sub>chr22 reads subset (BLOW5 format)</sub> | | <sub>[PGXXSX240041_reads_chr22.blow5](https://slow5.bioinf.science/hg2_prom2_5khz_chr22)</sub> <sub>(``)</sub> |
| <sub>~19M reads complete PromethION dataset (BLOW5 format)</sub> | <sub>[ERR12997168](https://www.ebi.ac.uk/ena/browser/view/ERR12997168)</sub> | <sub> [PGXXSX240041_reads.blow5](https://slow5.bioinf.science/hg2_prom2_5khz) (`b9e0f4fc49ffe4d1e39dc9c09eccdeac`), [PGXXSX240041_reads.blow5.idx](https://slow5.bioinf.science/hg2_prom2_5khz_idx) (`18ac205e53552bcb561ea5b3a55cd9b7`) </sub>* |

*This dataset is hosted in the [gtgseq AWS bucket](https://aws.amazon.com/marketplace/pp/prodview-rve772jpfevtw) granted by the AWS open data sponsorship programme, for which the documentation available under the [gtgseq GitHub repository](https://github.com/GenTechGp/gtgseq).
Expand All @@ -37,8 +37,8 @@ An NA24385 R10.4.1 LSK114 dataset with ~20X coverage sequenced on a PromethION a
| <sub>Description</sub> | <sub>ENA run Data access</sub> | <sub>Direct download link (md5sum)</sub> |
|------------------------------------------------------|------------------------------------------------------------------------------------------------------------|----------------------|
| <sub>~20K reads subsubset (BLOW5 format)</sub> | | <sub>[PGXXXX230339_reads_20k.blow5](https://slow5.bioinf.science/hg2_prom_5khz_subsubsample)</sub> <sub>(`d4bb9a40eb89647c2bb74b724d63cef4`)</sub> |
| <sub>~500K reads subsubset (BLOW5 format)</sub> | | <sub>[PGXXXX230339_reads_500k.blow5](https://slow5.bioinf.science/hg2_prom_5khz_subsample)</sub> <sub>(`4cfe7a3ab4fbb45f87fd4ddc3c0b6eca`)</sub> |
| <sub>chr22 reads subsubset (BLOW5 format)</sub> | | <sub>[PGXXXX230339_reads_chr22.blow5](https://slow5.bioinf.science/hg2_prom_5khz_chr22)</sub> <sub>(``)</sub> |
| <sub>~500K reads subset (BLOW5 format)</sub> | | <sub>[PGXXXX230339_reads_500k.blow5](https://slow5.bioinf.science/hg2_prom_5khz_subsample)</sub> <sub>(`4cfe7a3ab4fbb45f87fd4ddc3c0b6eca`)</sub> |
| <sub>chr22 reads subset (BLOW5 format)</sub> | | <sub>[PGXXXX230339_reads_chr22.blow5](https://slow5.bioinf.science/hg2_prom_5khz_chr22)</sub> <sub>(``)</sub> |
| <sub>~12M reads complete PromethION dataset (BLOW5 format)</sub> | <sub>[ERR12997167](https://www.ebi.ac.uk/ena/browser/view/ERR12997167)</sub> | <sub> [PGXXXX230339_reads.blow5](https://slow5.bioinf.science/hg2_prom_5khz) (`2dab2e0c042b0fb5f9f3794c7c916420`), [PGXXXX230339_reads.blow5.idx](https://slow5.bioinf.science/hg2_prom_5khz_idx) (`84a1b5317f0e92f73143070481df8fe3`) </sub>* |

*This dataset is hosted in the [gtgseq AWS bucket](https://aws.amazon.com/marketplace/pp/prodview-rve772jpfevtw) granted by the AWS open data sponsorship programme, for which the documentation available under the [gtgseq GitHub repository](https://github.com/GenTechGp/gtgseq).
Expand All @@ -57,7 +57,7 @@ Universal human reference RNA (300 ng polyA enriched RNA) sequenced on a Prometh
| <sub>Description</sub> | <sub>ENA run Data access</sub> | <sub>Direct download link (md5sum)</sub> |
|------------------------------------------------------|------------------------------------------------------------------------------------------------------------|----------------------|
| <sub>~20K reads subsubset (BLOW5 format)</sub> | | <sub>[PNXRXX240011_reads_20k.blow5](https://slow5.bioinf.science/uhr_prom_subsubsample)</sub> <sub>(``)</sub> |
| <sub>~500K reads subsubset (BLOW5 format)</sub> | | <sub>[PNXRXX240011_reads_500k.blow5](https://slow5.bioinf.science/uhr_prom_subsample)</sub> <sub>(``)</sub> |
| <sub>~500K reads subset (BLOW5 format)</sub> | | <sub>[PNXRXX240011_reads_500k.blow5](https://slow5.bioinf.science/uhr_prom_subsample)</sub> <sub>(``)</sub> |
| <sub>~15M reads complete PromethION dataset (BLOW5 format)</sub> | <sub>[ERR12997170](https://www.ebi.ac.uk/ena/browser/view/ERR12997170)</sub> | <sub> [PNXRXX240011_reads.blow5](https://slow5.bioinf.science/uhr_prom) (`671be5b88f2b54a9e22ced351493b7a9`), [PNXRXX240011_reads.blow5.idx](https://slow5.bioinf.science/uhr_prom_idx) (`e3ea326d300a22008e2821ce10d17649`) </sub>*

*This dataset is hosted in the [gtgseq AWS bucket](https://aws.amazon.com/marketplace/pp/prodview-rve772jpfevtw) granted by the AWS open data sponsorship programme, for which the documentation available under the [gtgseq GitHub repository](https://github.com/GenTechGp/gtgseq).
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