Resquiggle TSV formatting issue: kmer base with "." as end_raw_idx includes additional tab

[williamphu]

Hi,

I haven't found a similar issue, so apologies if this has already been addressed.

The output of f5c tsv resquiggle appears to add an additional tab at the end of the line in cases where there is no corresponding signal for a kmer, at least in the case of running f5c resquiggle using a direct RNA sequencing dataset.

Quick look at the code suggest maybe this is the incorrect section?

f5c/src/resquiggle.c

Lines 411 to 412 in a88df46

	if(signal_end_point<0){
	printf(".\t");

Here's an example of what I mean:

sed 's/\.\t\.\t/\.\t\./g' seemed to fix it.

Thanks.

[hasindu2008]

Hey

Thanks for reporting this. It is a mistake in the code at

f5c/src/resquiggle.c

Line 412 in a88df46

printf(".\t");

where I am unnecessarily printing a tab. WIll get it fixed in the next release.

Regards