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| ../Schroeder/longseqs/GPA_gblocks_noshort.aln |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,204 @@ | ||
| >Emi374_CAMPEP_0187577462 | ||
| ccgtcgagga ggtgcctgcc gacgcacctg ccgaggcggc cgacgcagtc gagccggccg | ||
| aggacaagaa catcctccaa aaggcggccg actacgtcaa gtccttctcg ggtcgcgtgg | ||
| agcccgagcc ggccgccgag gagcccgccg tcgagcccga ggcagcgccg gagggcggct | ||
| acgaggcgcc gaaggaggag gcgtcggccg aggaggcgcc ggccgaggag gcgccggagc | ||
| ccgagccgga gaccgcctcg ttcctcgaca aggtgaagag ctacctctcg cctcggcccg | ||
| aggtgcccga gggggccgtc gacaccgcga tcgacaagct cgagaccaag gttggcagcg | ||
| acctcgatgg cgacggcgaa gtggctggcg ttcccgtcga ggcggctgcg gaggaggtgg | ||
| aggcggcgac cgaggcggtg gaggccgccg ccgaggcggt ggaggctgcg gtggaggctg | ||
| cgccggcggt gccggagaag aaggagtcgt acctcggaaa ggtggcctcg atcctctctc | ||
| cgcgcaagaa ggcggcctcc gacgcttcgg ccgccgatgc gcccgcagct gacgacgcgg | ||
| cggaggcagc ggaggcggaa cccgtggcgg aggcggaggc ggaggcggcg cccgaggtgg | ||
| caccggaggc ggaggaggag aagccgagcc tgatccagaa gctctccaag gccttctcca | ||
| gcatcatccc cgccacgccg cagtgccttc ccggccggcc ctcggagagc acgctgaacg | ||
| cctccgagac gtccgccgac gcgccgtcgg cggcggagga ggaggaggcc gcccccgcgt | ||
| acaaggcgga ggcgccggct gaggaggtca aggcttaggg tccttgcgca ggcgctcttc | ||
| gggctgggac atgcacgtgt cggcaggaga gcgcgtcagg gggggg | ||
| >Emi379_CAMPEP_0187613902 | ||
| ccgtcgagga ggtgcctgcc gacgcacctg ccgaggcggc cgacgcagtc gagccggccg | ||
| aggacaagaa catcctccaa aaggcggccg actacgtcaa gtccttctcg ggtcgcgtgg | ||
| agcccgagcc ggccgccgag gagcccgccg tcgagcccga ggcagcgccg gagggcggct | ||
| acgaggcgcc gaaggaggag gcgtcggccg aggaggcgcc ggccgaggag gcgccggagc | ||
| ccgagccgga gaccgcctcg ttcctcgaca aggtgaagag ctacctctcg cctcggcccg | ||
| aggtgcccga gggggccgtc gacaccgcga tcgacaagct cgagaccaag gttggcagcg | ||
| acctcgatgg cgacggcgaa gtggctggcg ttcccgtcga ggcggctgcg gaggaggtgg | ||
| aggcggcgac cgaggcggtg gaggccgccg ccgaggcggt ggaggctgtg gtggaggctg | ||
| cgccggcggt gccggagaag aaggagtcgt acctcggaaa ggtggcctcg atcctctctc | ||
| cgcgcaagaa ggcgggctcc gacgcttcgg ccgccgatgc gcccgcagct gacgacgcgg | ||
| cggaggcagc ggaggcggaa cccgtggcgg aggcggaggc ggaggcggcg cccgaggtgg | ||
| caccggaggc ggaggaggag aagccgagcc tgatccagaa gctctccaag gccttctcca | ||
| gcatcatccc cgccacgccg cagtgccttc ccggccggcc ctcggagagc acgctgaacg | ||
| cctccgagac gtccgccgac gcgccgtcgg cggcggagga ggaggaggcc gcccccgcgt | ||
| acaaggcgga ggcgccggct gaggaggtca aggcttaggg tccttgcgca ggcgctcttc | ||
| gggctgggac atgcacgtgt cggcaggaga gcgcgtcggg gggggg | ||
| >Emihu1_431830 | ||
| ccgtcgagga ggtgcctgcc gacgcacctg ccgaggcggc cgacgcagtc gagccggccg | ||
| aggacaagaa cattctccaa aaggcggccg actacgtcaa gtccttctcg ggtcgcgtgg | ||
| agcccgagcc ggccgccaaa gagcccgccg tcgagcccga ggcagcgccg gagggcggct | ||
| acgaggcgcc gaaggaggag gcgtcggccg aggaggcgcc ggccgaggag gcgccggagc | ||
| ccgagccgga gaccgcctcg ttcctcgaca aggtgaagag ctacctctcg cctcggcccg | ||
| aggtgcccga gggggccgtc gacaccgcga tcgacaagct cgagaccaag gttggcagcg | ||
| acctcgatgg cgacggcgaa gtggctggcg ttcccgtcga ggcggctgcg gaggaggtgg | ||
| aggcggcgac cgaggcggtg gaggccgccg ccgaggcggt ggaggctgcg gtggaggctg | ||
| cgccggcggt gccggagaag aaggagtcgt acctcggaaa ggtggcctcg atcctctctc | ||
| cgcgcaagaa ggcggcctcc gacgcttcgg ccgccgatgc gcccgcagct gacgacgcgg | ||
| cggaggcagc ggaggcggaa cccgtggcgg aggcggaggc ggaggcggcg cccgaggtgg | ||
| caccggaggc ggaggaggag aagccgagcc tgatccagaa gctctccaag gccttctcca | ||
| gcatcatccc cgccacgccg cagtgccttc ccggccggcc ctcggagagc acgctgaacg | ||
| cctccgagac gtccgccgac gcgccgtcgg cggcggagga ggaggaggcc gcccccgcgt | ||
| acaaggcgga ggcgccggct gaggaggtca aggcttaggg tccttgcgca ggcgctcttc | ||
| gggctgggac atgcacgtgt cggcaggaga gcgcgtcagg gggggg | ||
| >Emi219_CAMPEP_0187761750 | ||
| ccgtcgagga ggtgcctgcc gacgcacctg ccgaggcggc cgacgcagtc gagccggccg | ||
| aggacaagaa catcctccaa aaggcggccg actacgtcaa gtccttctcg ggtcgcgtag | ||
| agc------- --ccgccgag gagcccgccg tcgagcccga ggcagcgccg gagggcggct | ||
| acgaggcgcc gaaggaggag gcgtcggccg aggaggcgcc ggccgaggag gcgccggagc | ||
| ccgagccgga gaccgcctcg ttcctcgaca aggtgaagag ctacctctcg cctcggcccg | ||
| aggtgcccga gggggccgtc gacaccgcga tcgacaagct cgagaccaag gttggcagcg | ||
| acctcgatgg cgacggcgaa gtggctggcg ttcccgtcga ggcggctgcg gaggaggtgg | ||
| aggcggcgac cgaggcggtg gaggccgccg ccgaggcggt ggaggctgcg gtggaggctg | ||
| cgccggcggt gccggagaag aaggagtcgt acctcggaaa ggtggcctcg atcctctctc | ||
| cgcgcaagaa ggcggcctcc gacgcttcgg ccgccgatgc gcccgcagct gacgacgcgg | ||
| cggaggcagc ggaggcggaa cccgtggcgg aggcggaggc ggaggcggcg cccgaggtgg | ||
| caccggaggc ggaggaggag aagccgagcc tgatccagaa gctctccaag gccttctcca | ||
| gcatcatccc cgccacgccg cagtgccttc ccggccggcc ctcggagagc acgctgaacg | ||
| cctccgagac gtccgccgac gcgccgtcgg cggcggagga ggaggaggcc gcccccgcgt | ||
| acaaggcgga ggcgccggct gaggaggtca aggcttaggg tccttgcgca ggcgctcttc | ||
| gggctgggac atgcacgtgt cggcaggaga gcgcgtcagg gggggg | ||
| >Emi370_CAMPEP_0187661956 | ||
| ccgtcgagga ggtgcctgcc gacgcacctg ccgaggcggc cgacgcagtc gagccggccg | ||
| aggacaagaa catcctccaa aaggcggccg actacgtcaa gtccttctcg ggtcgcgtgg | ||
| agcccgagcc ggccgccgag gagcccgccg tcgagcccga ggcagcgccg gagggcggct | ||
| acgaggcgcc gaaggaggag gcgtcggccg aggaggcgcc ggccgaggag gcgccggagc | ||
| ccgagccgga gaccgcctcg ttcctcgaca aggtgaagag ctacctctcg cctcggcccg | ||
| aggtgcccga gggggcggtc gacaccgcga tcgacaagct cgagaccaag gttggcagcg | ||
| acctcgatgg cgacggcgaa gtggctggcg ttcccgtcga ggcggctgcg gaggaggtgg | ||
| aggcggcgac cgaggcggtg gaggccgccg ccgaggcggt ggaggctgcg gtggaggctg | ||
| cgccggcggt gccggagaag aaggagtcgt acctcggaaa ggtggcctcg atcctctctc | ||
| cgcgcaagaa ggcgggctcc gacgcttcgg ccgccgatgc gcccgcagct gacgacgcgg | ||
| cggaggcagc ggaggcggaa cccgtggcgg aggcggaggc ggaggcggcg cccgaggtgg | ||
| caccggaggc ggaggaggag aagccgagcc tgatccagaa gctctccaag gccttctcca | ||
| gcatcatccc cgccacgccg cagtgccttc ccggccggcc ctcggagagc acgctgaacg | ||
| cctccgagac gtccgccgac gcgccgtcgg cggcggagga ggaggaggcc gcccccgcgt | ||
| acaaggcgga ggcgccggct gaggaggtca aggcttaggg tccttgcgca ggcgctcttc | ||
| gggctgggac atgcacgtgt cggcaggaga gcgcgtcggg gggggg | ||
| >CAMNT_0027939863 | ||
| ccgtcgacga ggtgcctacc gacgcaccta ccgagccggc cgacgcagtc gagcccgccg | ||
| aggacaagaa catcctccaa aaggcggccg actacgtgaa gtccttctcg ggccgcatgg | ||
| agcccgagcc ggccgccgag gagcccgctg tcgagccgga ggcagcgccg gagggcggct | ||
| acaaggcgcc gacggaggag gcgtcggccg aggaggcgcc ggccgaggag gcgccggagc | ||
| ccgagccgga gaccgcctcg ttcctcgaca aggtgaagag ctacctctcg cctcggcccg | ||
| aggtgcccga gggggccgtc gacaccgcga tcgacaagct cgagaccaag gttggcagcg | ||
| acctcgatgg cgacggcgaa gtggctggag ctcccgtcga ggcggctgcg gaggaggtgg | ||
| aggcggcgac cgaggcggtg gagggcgccg ccgaggcagt ggaggctgcg gtggaggctg | ||
| cgccggcggt gctggagaag aaggagtcgt acctcggaaa ggtggcctcg atcctctctc | ||
| cgcgcaagaa ggcggccccc gacgcttcgg ccgccgatgc gcccgcagct gacgacgcgg | ||
| cggaggcagc ggaggcggaa cccgtggcgg aggcggaggc ggcggcggcg cccgaggtgg | ||
| caccagaagc ggaggaggag aagccgagcc tgatccagaa gctctccaag gccttctcca | ||
| gcatcatccc ccccgcgccg cagtgccttc ccggccggcc ctcggagagc acgctgaacg | ||
| cctccgagac gtccgccgac gcgccatcgg cggcggcgga ggaggaggcc gcccccgcgg | ||
| acaaggcgga ggcgccggct gaggaggtca aggcttaggg tccttgcgca ggcgctcttc | ||
| gggctgggac atgcacgtgt cggcaggaga gcgcgtcccg gggggg | ||
| >CAMNT_0028073511 | ||
| ccgtcgacga ggtgcctacc gacgcaccta ccgagccggc cgacgcagtc gagcccgccg | ||
| aggacaagaa catcctccaa aaggcggccg actacgtgaa gtccttctcg ggccgcatgg | ||
| agcccgagcc ggccgccgag gagcccgctg tcgagccgga ggcagcgccg gagggcggct | ||
| acaaggcgcc gacggaggag gcgtcggccg aggaggcgcc ggccgaggag gcgccggagc | ||
| ccgagccgga gaccgcctcg ttcctcgaca aggtgaagag ctacctctcg cctcggcccg | ||
| aggtgcccga gggggccgtc gacaccgcga tcgacaagct cgagaccaag gttggcagcg | ||
| acctcgatgg cgacggcgaa gtggctggag ctcccgtcga ggcggctgcg gaggaggtgg | ||
| aggcggcgac cgaggcggtg gagggcgccg ccgaggcagt ggaggctgcg gtggaggctg | ||
| cgccggcggt gctggagaag aaggagtcgt acctcggaaa ggtggcctcg atcctctctc | ||
| cgcgcaagaa ggcggccccc gacgcttcgg ccgccgatgc gcccgcagct gacgacgcgg | ||
| cggaggcagc ggaggcggaa cccgtggcgg aggcggaggc ggcggcggcg cccgaggtgg | ||
| caccagaagc ggaggaggag aagccgagcc tgatccagaa gctctccaag gccttctcca | ||
| gcatcatccc ccccgcgccg cagtgccttc ccggccggcc ctcggagagc acgctgaacg | ||
| cctccgagac gtccgccgac gcgccatcgg cggcggcgga ggaggaggcc gcccccgcgg | ||
| acaaggcgga ggcgccggct gaggaggtca aggcttaggg tccttgcgca ggcgctcttc | ||
| gggctgggac atgcacgtgt cggcaggaga gcgcgtcccg gggggg | ||
| >CAMNT_0027961343 | ||
| ccgtcgacga ggtgcctacc gacgcaccta ccgagccggc cgacgcagtc gagcccgccg | ||
| aggacaagaa catcctccaa aaggcggccg actacgtgaa gtccttctcg ggccgcatgg | ||
| agcccgagcc ggccgccgag gagcccgctg tcgagccgga ggcagcgccg gagggcggct | ||
| acaaggcgcc gacggaggag gcgtcggccg aggaggcgcc ggccgaggag gcgccggagc | ||
| ccgagccgga gaccgcctcg ttcctcgaca aggtgaagag ctacctctcg cctcggcccg | ||
| aggtgcccga gggggccgtc gacaccgcga tcgacaagct cgagaccaag gttggcagcg | ||
| acctcgatgg cgacggcgaa gtggctggag ctcccgtcga ggcggctgcg gaggaggtgg | ||
| aggcggcgac cgaggcggtg gagggcgccg ccgaggcagt ggaggctgcg gtggaggctg | ||
| cgccggcggt gctggagaag aaggagtcgt acctcggaaa ggtggcctcg atcctctctc | ||
| cgcgcaagaa ggcggccccc gacgcttcgg ccgccgatgc gcccgcagct gacgacgcgg | ||
| cggaggcagc ggaggcggaa cccgtggcgg aggcggaggc ggcggcggcg cccgaggtgg | ||
| caccagaagc ggaggaggag aagccgagcc tgatccagaa gctctccaag gccttctcca | ||
| gcatcatccc ccccgcgccg cagtgccttc ccggccggcc ctcggagagc acgctgaacg | ||
| cctccgagac gtccgccgac gcgccatcgg cggcggcgga ggaggaggcc gcccccgcgg | ||
| acaaggcgga ggcgccggct gaggaggtca aggcttaggg tccttgcgca ggcgctcttc | ||
| gggctgggac atgcacgtgt cggcaggaga gcgcgtcccg gg---- | ||
| >92A_paired_contig_12161 | ||
| ccgtcgagga ggtgcctgcc gacgcacctg ccgaggcggc cgacgcagtc gagccggccg | ||
| aggacaagaa catcctccaa aaggcggccg actacgtcaa gtccttctcg ggtcgcgtgg | ||
| agcccgagcc ggccgccgag gagcccgccg tcgagcccga ggcagcgccg gagggcggct | ||
| acgaggcgcc gaaggaggag gcgtcggccg aggaggcgcc ggccgaggag gcgccggagc | ||
| ccgagccgga gaccgcctcg ttcctcgaca aggtgaagag ctacctctcg cctcggcccg | ||
| aggtgcccga gggggccgtc gacaccgcga tcgacaagct cgagaccaag gttggcagcg | ||
| acctcgatgg cgacggcgaa gtggctggcg ttcccgtcga ggcggctgcg gaggaggtgg | ||
| aggcggcgac cgaggcggtg gaggccgccg ccgaggcggt ggaggctgtg gtggaggctg | ||
| cgccggcggt gccggagaag aaggagtcgt acctcggaaa ggtggcctcg atcctctctc | ||
| cgcgcaagaa ggcgggctcc gacgcttcgg ccgccgatgc gcccgcagct gacgacgcgg | ||
| cggaggcagc ggaggcggaa cccgtggcgg aggcggaggc ggaggcggcg cccgaggtgg | ||
| caccggaggc ggaggaggag aagccgagcc tgatccagaa gctctccaac gccttctcca | ||
| gcatcatccc cgccacgccg cagtgccttc ccggccggcc ctcggagagc acgctgaacg | ||
| cctccgagac gtccgccgac gcgccgtcgg cggcggagga ggaggaggcc gcccccgcgt | ||
| acaaggcgga ggcgccggct gaggaggtca aggcttaggg tccttgcgca ggcgctcttc | ||
| gggctgggac atgcacgtgt cggcaggaga gcgcgtcggg gggggg | ||
| >van556_paired_contig_7541 | ||
| ccgtcgagga ggtgcctgcc gacgcacctg ccgaggcggc cgacgcagtc gagccggccg | ||
| aggacaagaa catcctccaa aaggcggccg actacgtcaa gtccttctcg ggtcgcgtag | ||
| agcccgaacc ggccgccgag gagcccgcgg tcgagcccga ggcagcgccg gagggcggct | ||
| acgaggcgcc gaaggaggag gcgtcggccg aggaggtgcc ggccgaggag gcgccggagc | ||
| ccgagccgga gaccgcctcg ttcctcgaca aggtgaagag ctacctctcg cctcggcccg | ||
| aggtgcccga gggggccgtc gacaccgcca tcgacaagct cgagaccaag gttggcagcg | ||
| acctcgatgg cgacggcgaa gtggctggcg ttcccgtcga ggcggctgcg gaggaggtgg | ||
| aggcggcgac cgaggcggtg gaggccgccg ccgaggcggt ggaggctgcg gtggaggctg | ||
| cgccggcggt gccggagaag aaggagtcgt acctcggaaa ggtggcctcg atcctctctc | ||
| cgcgcaagaa ggcggcctcc gacgcttcgg ccgccgatgc gcccgcagct gacgacgcgg | ||
| cggaggcagc ggaggcggaa cccgtggcgg aggcggaggc ggaggcggcg cccgaggtgg | ||
| caccggaggc ggaggaggag aagccgagcc tgatccagaa gctctccaag gccttctcca | ||
| gcatcatccc cgccacgccg cagtgccttc ccggccggcc ctcggagagc acgctgaacg | ||
| cctccgagac gtccgccgac gcgccgtcgg cggcggagga ggaggaggcc gcccccgcgt | ||
| acaagacgga ggcgccggct gaggaggtca aggcttaggg tccttgcgca ggcgctcttc | ||
| gggctgggac atgcacgtgt cggcaggaga gcgcgtcggg gggggg | ||
| >CAMNT_0042052997 | ||
| ccgtcgagga ggtgcctgcc gacgcacctg ccgaggcggc cgacgcagtc gagccggccg | ||
| aggacaagaa catcctccaa aaggcggccg actacgtcaa gtccttctcg ggtcgcgtag | ||
| agcccgaacc ggccgccgag gagcccgcgg tcgagcccga ggcagcgccg gagggcggct | ||
| acgaggcgcc gaaggaggag gcgtcggccg aggaggcgcc ggccgaggag gcgccggagc | ||
| ccgagccgga gaccgcctcg ttcctcgaca aggtgaagag ctacctctcg cctcggcccg | ||
| aggtgcccga gggggccgtc gacaccgcga tcgacaagct cgagaccaag gttggcagcg | ||
| acctcgatgg cgacggcgaa gtggctggag ttcccgtcga ggcggctgcg gaggaggtgg | ||
| aggcggcgac cgaggcggtg gaggccgccg ccgaggcggt ggaggctgcg gtggaggctg | ||
| cgccggcggt gccggagaag aaggagtcgt acctcggaaa ggtggcctcg atcctctctc | ||
| cgcgcaagaa ggcggcctcc gacgcttcgg ccgccgatgc gcccgcagct gacgacgcgg | ||
| cggaggcagc ggaggcggaa cccgtggcgg aggcggaggc ggaggcggcg cccgaggtgg | ||
| caccggaggc ggaggaggag aagccgagcc tgatccagaa gctctccaag gccttctcca | ||
| gcatcatccc cgccacgccg cagtgccttc ccggccggcc ctcggagagc acgctgaacg | ||
| cctccgagac gtccgccgac gcgccgtcgg cggcggagga ggaggaggcc gcccccgcgt | ||
| acaaggcgga ggcgccggct gaggaggtca aggcttaggg tccttgcgca ggcgctcttc | ||
| gggctgggac atgcacgtgt cggcaggaga gcgcgtcggg gggggg | ||
| >CAMNT_0049456119 | ||
| ccgtcgagga ggtgcctgcc gacgcacctg ccgaggcggc cgacgcagtc gagccggccg | ||
| aggacaagaa catcctccaa aaggcggccg actacgtcaa gtccttctcg ggtcgcgtag | ||
| agcccgaacc ggccgccgag gagcccgcgg tcgagcccga ggcagcgccg gagggcggct | ||
| acgaggcgcc gaaggaggag gcgtcggccg aggaggcgcc ggccgaggag gcgccggagc | ||
| ccgagccgga gaccgcctcg ttcctcgaca aggtgaagag ctacctctcg cctcggcccg | ||
| aggtgcccga gggggccgtc gacaccgcga tcgacaagct cgagaccaag gttggcagcg | ||
| acctcgatgg cgacggcgaa gtggctggag ttcccgtcga ggcggctgcg gaggaggtgg | ||
| aggcggcgac cgaggcggtg gaggccgccg ccgaggcggt ggaggctgcg gtggaggctg | ||
| cgccggcggt gccggagaag aaggagtcgt acctcggaaa ggtggcctcg atcctctctc | ||
| cgcgcaagaa ggcggcctcc gacgcttcgg ccgccgatgc gcccgcagct gacgacgcgg | ||
| cggaggcagc ggaggcggaa cccgtggcgg aggcggaggc ggaggcggcg cccgaggtgg | ||
| caccggaggc ggaggaggag aagccgagcc tgatccagaa gctctccaag gccttctcca | ||
| gcatcatccc cgccacgccg cagtgccttc ccggccggcc ctcggagagc acgctgaacg | ||
| cctccgagac gtccgccgac gcgccgtcgg cggcggagga ggaggaggcc gcccccgcgt | ||
| acaaggcgga ggcgccggct gaggaggtca aggcttaggg tccttgcgca ggcgctcttc | ||
| gggctgggac atgcacgtgt cggcaggaga gcgcgtcggg gggggg |
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