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[notebook] add GenotypeHarmonizer to ccg-workshop #4981

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Dec 14, 2018
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[notebook] add GenotypeHarmonizer to ccg-workshop #4981

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add GenotypeHarmonizer
  • Loading branch information
@danking
danking committed Dec 14, 2018
commit a4c744feccb03edca8b720c5d994afb3df7330c9
11 changes: 11 additions & 0 deletions notebook/images/ccg-workshop/Dockerfile
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Original file line number Diff line number Diff line change
@@ -129,3 +129,14 @@ COPY stooges.csv .
RUN Rscript -e 'source("https://bioconductor.org/biocLite.R"); \
biocLite("Biostrings"); \
install.packages("dplyr")'

USER root
RUN apt-get update && apt-get install -y vim dos2unix
USER jovyan

RUN mkdir genotype-harmonizer && \
(cd genotype-harmonizer && \
wget https://molgenis26.gcc.rug.nl/downloads/GenotypeHarmonizer/GenotypeHarmonizer-1.4.20-dist.tar.gz && \
tar -xf GenotypeHarmonizer-1.4.20-dist.tar.gz && \
rm -rf GenotypeHarmonizer-1.4.20-dist.tar.gz && \
find . -name '*.sh' | xargs dos2unix)