gronteix
Follow
Stars
Decima is a Python library to train sequence models on single-cell RNA-seq data.
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
Aggregates or summarizes omics data into higher level functional representations such as GO terms gene sets or KEGG metabolic pathways, facilitating the analysis of functional molecular sets that a…
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
The Genetic Perturbation Platform's tool for deconvoluting and quantifying the results of pooled screens
Tools to analyze intestinal organoid imaging at the Martin-Alonso/Oudhoff lab
Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks
Implementation of Percolate, an exponential family JIVE statistical model for multi-view integration
GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
RETFound - A foundation model for retinal image
[CVPR 2021] Official PyTorch implementation for Transformer Interpretability Beyond Attention Visualization, a novel method to visualize classifications by Transformer based networks.
Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
Open source tools for computational pathology - Nature BME
benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.
Examples and guides for using the OpenAI API
AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
interactive & hardware agnostic SDK for lab automation
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Python program to generate NetworkX graphs from segmented images.