Specifically the tmp files that get written after calling prediction algorithms contains the allele in their name. These can have *, :, and / as special characters. We should use a method like https://github.com/griffithlab/pVACtools/blob/master/pvactools/lib/output_parser.py#L249 to normalize the allele before constructing the tmp file path.
Specifically the tmp files that get written after calling prediction algorithms contains the allele in their name. These can have
*,:, and/as special characters. We should use a method like https://github.com/griffithlab/pVACtools/blob/master/pvactools/lib/output_parser.py#L249 to normalize the allele before constructing the tmp file path.