Fix removing some packages will result dirty data #34709
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Fix #32830
Inspired by #22810 and replace it.
When deleting alphe, cargo, debian, rpm packages, some extra actions should be taken which was missed. It will result in dirty data and inconsistent. This PR fix it. To avoid recycle dependencies, this is a quick patch. Like #22810 (comment) said, this might need a new design for such more packages types.