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1. HopkinsIDD/IDSpatialStats HopkinsIDD/IDSpatialStats Public

   R 6 8

2. COVID-19-Mobility-Data-Network/mobility COVID-19-Mobility-Data-Network/mobility Public

   An R package containing functions for parsing mobility data, fitting models using Bayesian inference, and simulating mobility patterns.

   R 26 3

3. HopkinsIDD/phylosamp HopkinsIDD/phylosamp Public

   The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linkage and sample size calculations for phylogenetic studies.

   R 13 3

4. WES WES Public

   WES: an R package providing methods for analyzing Wastewater and Environmental Sampling (WES) data.

   R 2

5. InstituteforDiseaseModeling/MOSAIC-docs InstituteforDiseaseModeling/MOSAIC-docs Public

   Documentation for the Metapopulation Outbreak Simulation with Agent-based Implementation for Cholera (MOSAIC).

   R

6. InstituteforDiseaseModeling/MOSAIC-pkg InstituteforDiseaseModeling/MOSAIC-pkg Public

   The R package for the Metapopulation Outbreak Simulation with Agent-based Implementation for Cholera (MOSAIC).

   R