Merge pull request conda-forge#5907 from leylabmpi/master

Add r-caper recipe

recipes/r-caper/bld.bat

@@ -0,0 +1,2 @@
+"%R%" CMD INSTALL --build .
+IF %ERRORLEVEL% NEQ 0 exit 1

recipes/r-caper/build.sh

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+#!/bin/bash
+if [[ $target_platform =~ linux.* ]] || [[ $target_platform == win-32 ]] || [[ $target_platform == win-64 ]] || [[ $target_platform == osx-64 ]]; then
+  export DISABLE_AUTOBREW=1
+  $R CMD INSTALL --build .
+else
+  mkdir -p $PREFIX/lib/R/library/caper
+  mv * $PREFIX/lib/R/library/caper
+fi

recipes/r-caper/meta.yaml

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+{% set version = '1.0.1' %}
+{% set posix = 'm2-' if win else '' %}
+{% set native = 'm2w64-' if win else '' %}
+{% set cran_mirror = 'https://cran.r-project.org' %}
+
+package:
+  name: r-caper
+  version: {{ version|replace("-", "_") }}
+
+source:
+  fn: caper_{{ version }}.tar.gz
+  url:
+    - {{ cran_mirror }}/src/contrib/caper_{{ version }}.tar.gz
+    - {{ cran_mirror }}/src/contrib/Archive/caper/caper_{{ version }}.tar.gz
+  sha256: 44047c53883e7c4c579878d0a4ef9855478cd3f7bebad348135bf3239fd5a055
+
+build:
+  number: 0
+  skip: true  # [win32]
+  rpaths:
+    - lib/R/lib/
+    - lib/
+
+requirements:
+  build:
+  host:
+    - r-base
+    - r-mass
+    - r-ape >=3.0_6
+    - r-mvtnorm
+  run:
+    - r-base
+    - r-mass
+    - r-ape >=3.0_6
+    - r-mvtnorm
+
+test:
+  commands:
+    - $R -e "library('caper')"           # [not win]
+    - "\"%R%\" -e \"library('caper')\""  # [win]
+
+about:
+  home: https://CRAN.R-project.org/package=caper
+  license: GPL (>= 2)
+  summary: Functions for performing phylogenetic comparative analyses.
+  license_family: GPL3
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'  # [unix]
+  license_file: '{{ environ["PREFIX"] }}\R\share\licenses\GPL-3'  # [win]
+
+extra:
+  recipe-maintainers:
+    - nick-youngblut
+    - johanneskoester
+    - bgruening
+    - daler
+    - jdblischak
+    - cbrueffer

recipes/r-picante/bld.bat

@@ -0,0 +1,2 @@
+"%R%" CMD INSTALL --build .
+IF %ERRORLEVEL% NEQ 0 exit 1

recipes/r-picante/build.sh

@@ -0,0 +1,8 @@
+#!/bin/bash
+if [[ $target_platform =~ linux.* ]] || [[ $target_platform == win-32 ]] || [[ $target_platform == win-64 ]] || [[ $target_platform == osx-64 ]]; then
+  export DISABLE_AUTOBREW=1
+  $R CMD INSTALL --build .
+else
+  mkdir -p $PREFIX/lib/R/library/picante
+  mv * $PREFIX/lib/R/library/picante
+fi

recipes/r-picante/meta.yaml

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+{% set version = '1.7' %}
+{% set posix = 'm2-' if win else '' %}
+{% set native = 'm2w64-' if win else '' %}
+{% set cran_mirror = 'https://cran.r-project.org' %}
+
+package:
+  name: r-picante
+  version: {{ version|replace("-", "_") }}
+
+source:
+  fn: picante_{{ version }}.tar.gz
+  url:
+    - {{ cran_mirror }}/src/contrib/picante_{{ version }}.tar.gz
+    - {{ cran_mirror }}/src/contrib/Archive/picante/picante_{{ version }}.tar.gz
+  sha256: 75e4d73080db67e776562a1d58685438461cbde39af46900c7838da56aef0a62
+
+build:
+  number: 0
+  skip: true  # [win]
+  rpaths:
+    - lib/R/lib/
+    - lib/
+
+requirements:
+  build:
+    - {{ compiler('c') }}        # [not win]
+    - {{native}}toolchain        # [win]
+    - {{posix}}filesystem        # [win]
+    - {{posix}}make
+  host:
+    - r-base
+    - r-ape
+    - r-nlme
+    - r-vegan
+  run:
+    - r-base
+    - {{native}}gcc-libs         # [win]
+    - r-ape
+    - r-nlme
+    - r-vegan
+
+test:
+  commands:
+    - $R -e "library('picante')"           # [not win]
+    - "\"%R%\" -e \"library('picante')\""  # [win]
+
+about:
+  home: https://CRAN.R-project.org/package=picante
+  license: GPL-2
+  summary: Functions for phylocom integration, community analyses, null-models, traits and evolution.
+    Implements numerous ecophylogenetic approaches including measures of community phylogenetic
+    and trait diversity, phylogenetic signal, estimation of trait values for unobserved
+    taxa, null models for community and phylogeny randomizations, and utility functions
+    for data input/output and phylogeny plotting. A full description of package functionality
+    and methods are provided by Kembel et al. (2010) <doi:10.1093/bioinformatics/btq166>.
+  license_family: GPL2
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'  # [unix]
+  license_file: '{{ environ["PREFIX"] }}\R\share\licenses\GPL-2'  # [win]
+
+extra:
+  recipe-maintainers:
+    - nick-youngblut
+    - johanneskoester
+    - bgruening
+    - daler
+    - jdblischak
+    - cbrueffer