gibsramen
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PPOPT Public
Forked from TAMUparametric/PPOPTSoftware Platform for solving and manipulating multiparametric programs in Python
Python MIT License UpdatedOct 17, 2024 -
atlassian-python-api Public
Forked from atlassian-api/atlassian-python-apiAtlassian Python REST API wrapper
Python Apache License 2.0 UpdatedSep 1, 2024 -
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hercules Public
Forked from DKenefake/herculesQUBO Solver and Heuristic Toolbox
Rust BSD 3-Clause "New" or "Revised" License UpdatedMay 12, 2024 -
q2-benchmark Public
Forked from kwcantrell/q2-benchmark -
gemelli Public
Forked from biocore/gemelliGemelli is a toolbox for running both Robust Aitchison PCA (RPCA) and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
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gibsramen.github.io Public
Forked from fongandrew/hydeoutA refreshed version of Hyde for Jekyll 3.x
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qadabra Public
Forked from biocore/qadabraSnakemake workflow for comparison of differential abundance ranks
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 27, 2023 -
BIRDMAn Public
Forked from biocore/BIRDMAnBayesian Inferential Regression for Differential Microbiome Analysis
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qupid Public
Case-control matching for microbiome data
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q2-diversity Public
Forked from qiime2/q2-diversity -
xebec Public
Snakemake pipeline for microbiome diversity effect size benchmarking
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evident Public
Forked from biocore/evident -
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evident-analyses Public
Forked from knightlab-analyses/evident-analysesJupyter Notebook UpdatedFeb 9, 2023 -
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snakemake Public
Forked from snakemake/snakemakeThis is the development home of the workflow management system Snakemake. For general information, see
HTML MIT License UpdatedJun 27, 2022 -
bento-tools Public
Forked from YeoLab/bento-toolsA Python toolkit for subcellular analysis of spatial transcriptomics data
Python MIT License UpdatedJun 11, 2022 -
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empress Public
Forked from biocore/empressA very fast and scalable phylogenetic visualization viewer
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evident_ Public
Effect size calculations for microbiome data
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ganttly Public
Gantt charts in Python
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q2-convexhull Public
Forked from dpear/q2-convexhullQIIME2 plugin for calculating the convex hull as a diversity metric
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 7, 2022 -
CLAIM-scAEs Public
Forked from cartercompbio/CLAIM-scAEsA tutorial for using an autoencoder neural network model to create a visually interpretable latent space of single cell expression data.
Jupyter Notebook UpdatedFeb 2, 2022 -
cmdstanpy Public
Forked from stan-dev/cmdstanpyCmdStanPy is a lightweight interface to Stan for Python users which provides the necessary objects and functions to compile a Stan program and fit the model to data using CmdStan.
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 26, 2022