Add citation to the preprint of the GeometricKernels paper

geometric-kernels · Jul 12, 2024 · 71d2788 · 71d2788
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diff --git a/README.md b/README.md
@@ -153,8 +153,17 @@ This [link](https://github.com/geometric-kernels/GeometricKernels/issues/new?ass
 
 ## Citation
 
-If you are using GeometricKernels, please consider citing the theoretical papers it is based on.
+If you are using GeometricKernels, please cite the following [paper](https://arxiv.org/pdf/2407.08086):
+```
+@article{mostowsky2024,
+      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},
+      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},
+      year = {2024},
+      journal = {arXiv:2407.08086},
+}
+```
 
+Furthermore, please consider citing the theoretical papers the package is based on.
 You can find the relevant references for any space in
 - the docstring of the respective space class,
 - at the end of the respective tutorial notebook.
diff --git a/notebooks/Graph.ipynb b/notebooks/Graph.ipynb
@@ -820,6 +820,15 @@
     "If you are using graphs and GeometricKernels, please consider citing\n",
     "\n",
     "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
     "@inproceedings{borovitskiy2021,\n",
     "    title={Matérn Gaussian processes on graphs},\n",
     "    author={Borovitskiy, Viacheslav and Azangulov, Iskander and Terenin, Alexander and Mostowsky, Peter and Deisenroth, Marc and Durrande, Nicolas},\n",

diff --git a/notebooks/Hyperbolic.ipynb b/notebooks/Hyperbolic.ipynb
@@ -763,6 +763,15 @@
     "If you are using hyperbolic spaces and GeometricKernels, please consider citing\n",
     "\n",
     "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
     "@article{azangulov2023,\n",
     "    title={Stationary Kernels and Gaussian Processes on Lie Groups and their Homogeneous Spaces II: non-compact symmetric spaces},\n",
     "    author={Azangulov, Iskander and Smolensky, Andrei and Terenin, Alexander and Borovitskiy, Viacheslav},\n",

diff --git a/notebooks/Hypersphere.ipynb b/notebooks/Hypersphere.ipynb
@@ -732,6 +732,15 @@
     "If you are using (hyper)spheres and GeometricKernels, please consider citing\n",
     "\n",
     "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
     "@inproceedings{borovitskiy2020,\n",
     "    title={Matérn Gaussian processes on Riemannian manifolds},\n",
     "    author={Viacheslav Borovitskiy and Alexander Terenin and Peter Mostowsky and Marc Peter Deisenroth},\n",

diff --git a/notebooks/Mesh.ipynb b/notebooks/Mesh.ipynb
@@ -806,6 +806,15 @@
     "If you are using meshes and GeometricKernels, please consider citing\n",
     "\n",
     "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
     "@inproceedings{borovitskiy2020,\n",
     "    title={Matérn Gaussian processes on Riemannian manifolds},\n",
     "    author={Viacheslav Borovitskiy and Alexander Terenin and Peter Mostowsky and Marc Peter Deisenroth},\n",

diff --git a/notebooks/SPD.ipynb b/notebooks/SPD.ipynb
@@ -595,6 +595,15 @@
     "If you are using manifolds of symmetric positive definite matrices and GeometricKernels, please consider citing\n",
     "\n",
     "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
     "@article{azangulov2023,\n",
     "    title={Stationary Kernels and Gaussian Processes on Lie Groups and their Homogeneous Spaces II: non-compact symmetric spaces},\n",
     "    author={Azangulov, Iskander and Smolensky, Andrei and Terenin, Alexander and Borovitskiy, Viacheslav},\n",

diff --git a/notebooks/SpecialOrthogonal.ipynb b/notebooks/SpecialOrthogonal.ipynb
@@ -815,6 +815,15 @@
     "If you are using Lie groups and GeometricKernels, please consider citing\n",
     "\n",
     "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
     "@article{azangulov2022,\n",
     "    title={Stationary kernels and Gaussian processes on Lie groups and their homogeneous spaces I: the compact case},\n",
     "    author={Azangulov, Iskander and Smolensky, Andrei and Terenin, Alexander and Borovitskiy, Viacheslav},\n",

diff --git a/notebooks/SpecialUnitary.ipynb b/notebooks/SpecialUnitary.ipynb
@@ -873,6 +873,15 @@
     "If you are using Lie groups and GeometricKernels, please consider citing\n",
     "\n",
     "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
     "@article{azangulov2022,\n",
     "    title={Stationary kernels and Gaussian processes on Lie groups and their homogeneous spaces I: the compact case},\n",
     "    author={Azangulov, Iskander and Smolensky, Andrei and Terenin, Alexander and Borovitskiy, Viacheslav},\n",

diff --git a/notebooks/Torus.ipynb b/notebooks/Torus.ipynb
@@ -1155,6 +1155,15 @@
     "If you are using (hyper)tori and GeometricKernels, please consider citing\n",
     "\n",
     "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
     "@inproceedings{borovitskiy2020,\n",
     "    title={Matérn Gaussian processes on Riemannian manifolds},\n",
     "    author={Viacheslav Borovitskiy and Alexander Terenin and Peter Mostowsky and Marc Peter Deisenroth},\n",

diff --git a/notebooks/backends/JAX_Graph.ipynb b/notebooks/backends/JAX_Graph.ipynb
@@ -858,6 +858,15 @@
     "If you are using graphs and GeometricKernels, please consider citing\n",
     "\n",
     "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
     "@article{borovitskiy2020,\n",
     "    title={Matern Gaussian processes on Riemannian manifolds},\n",
     "    author={Viacheslav Borovitskiy and Alexander Terenin and Peter Mostowsky and Marc Peter Deisenroth},\n",

diff --git a/notebooks/backends/PyTorch_Graph.ipynb b/notebooks/backends/PyTorch_Graph.ipynb
@@ -858,6 +858,15 @@
     "If you are using graphs and GeometricKernels, please consider citing\n",
     "\n",
     "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
     "@article{borovitskiy2020,\n",
     "    title={Matern Gaussian processes on Riemannian manifolds},\n",
     "    author={Viacheslav Borovitskiy and Alexander Terenin and Peter Mostowsky and Marc Peter Deisenroth},\n",

diff --git a/notebooks/backends/TensorFlow_Graph.ipynb b/notebooks/backends/TensorFlow_Graph.ipynb
@@ -860,6 +860,15 @@
     "If you are using graphs and GeometricKernels, please consider citing\n",
     "\n",
     "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
     "@article{borovitskiy2020,\n",
     "    title={Matern Gaussian processes on Riemannian manifolds},\n",
     "    author={Viacheslav Borovitskiy and Alexander Terenin and Peter Mostowsky and Marc Peter Deisenroth},\n",

diff --git a/notebooks/frontends/GPJax.ipynb b/notebooks/frontends/GPJax.ipynb
@@ -585,6 +585,57 @@
     "fig.show(\"png\", width=1000, height=800)\n",
     "# fig.show()"
    ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "4e1846ab",
+   "metadata": {},
+   "source": [
+    "## Citations"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5bcc334a",
+   "metadata": {},
+   "source": [
+    "If you are using meshes and GeometricKernels, please consider citing\n",
+    "\n",
+    "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
+    "@inproceedings{borovitskiy2020,\n",
+    "    title={Matérn Gaussian processes on Riemannian manifolds},\n",
+    "    author={Viacheslav Borovitskiy and Alexander Terenin and Peter Mostowsky and Marc Peter Deisenroth},\n",
+    "    booktitle={Advances in Neural Information Processing Systems},\n",
+    "    year={2020}\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
+    "@article{sharp2020,\n",
+    "    author={Nicholas Sharp and Keenan Crane},\n",
+    "    title={A Laplacian for Nonmanifold Triangle Meshes},\n",
+    "    journal={Computer Graphics Forum (SGP)},\n",
+    "    volume={39},\n",
+    "    number={5},\n",
+    "    year={2020}\n",
+    "}\n",
+    "```"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3da06b2b",
+   "metadata": {},
+   "source": []
   }
  ],
  "metadata": {

diff --git a/notebooks/frontends/GPflow.ipynb b/notebooks/frontends/GPflow.ipynb
@@ -519,10 +519,51 @@
    ]
   },
   {
-   "cell_type": "code",
-   "execution_count": null,
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## Citations"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "If you are using meshes and GeometricKernels, please consider citing\n",
+    "\n",
+    "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
+    "@inproceedings{borovitskiy2020,\n",
+    "    title={Matérn Gaussian processes on Riemannian manifolds},\n",
+    "    author={Viacheslav Borovitskiy and Alexander Terenin and Peter Mostowsky and Marc Peter Deisenroth},\n",
+    "    booktitle={Advances in Neural Information Processing Systems},\n",
+    "    year={2020}\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
+    "@article{sharp2020,\n",
+    "    author={Nicholas Sharp and Keenan Crane},\n",
+    "    title={A Laplacian for Nonmanifold Triangle Meshes},\n",
+    "    journal={Computer Graphics Forum (SGP)},\n",
+    "    volume={39},\n",
+    "    number={5},\n",
+    "    year={2020}\n",
+    "}\n",
+    "```"
+   ]
+  },
+  {
+   "cell_type": "markdown",
    "metadata": {},
-   "outputs": [],
    "source": []
   }
  ],

diff --git a/notebooks/frontends/GPyTorch.ipynb b/notebooks/frontends/GPyTorch.ipynb
@@ -599,6 +599,51 @@
     "fig.show(\"png\", width=1000, height=800)"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "id": "8f934493",
+   "metadata": {},
+   "source": [
+    "## Citations"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "e2699d1e",
+   "metadata": {},
+   "source": [
+    "If you are using meshes and GeometricKernels, please consider citing\n",
+    "\n",
+    "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
+    "@inproceedings{borovitskiy2020,\n",
+    "    title={Matérn Gaussian processes on Riemannian manifolds},\n",
+    "    author={Viacheslav Borovitskiy and Alexander Terenin and Peter Mostowsky and Marc Peter Deisenroth},\n",
+    "    booktitle={Advances in Neural Information Processing Systems},\n",
+    "    year={2020}\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
+    "@article{sharp2020,\n",
+    "    author={Nicholas Sharp and Keenan Crane},\n",
+    "    title={A Laplacian for Nonmanifold Triangle Meshes},\n",
+    "    journal={Computer Graphics Forum (SGP)},\n",
+    "    volume={39},\n",
+    "    number={5},\n",
+    "    year={2020}\n",
+    "}\n",
+    "```"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,

diff --git a/notebooks/other/Bayesian Optimization.ipynb b/notebooks/other/Bayesian Optimization.ipynb
@@ -718,6 +718,15 @@
     "If you are using Bayesian optimization and GeometricKernels, please consider citing\n",
     "\n",
     "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
+    "```\n",
     "@inproceedings{jaquier2022,\n",
     "    title={Geometry-aware Bayesian optimization in robotics using Riemannian Matérn kernels},\n",
     "    author={Jaquier, Noémie and Borovitskiy, Viacheslav and Smolensky, Andrei and Terenin, Alexander and Asfour, Tamim and Rozo, Leonel},\n",

diff --git a/notebooks/other/Hyperbolic Approximations.ipynb b/notebooks/other/Hyperbolic Approximations.ipynb
@@ -647,6 +647,17 @@
    "source": [
     "## Citation\n",
     "\n",
+    "If you are using GeometricKernels and hyperbolic spaces, please consider citing\n",
+    "\n",
+    "```\n",
+    "@article{mostowsky2024,\n",
+    "      title = {The GeometricKernels Package: Heat and Matérn Kernels for Geometric Learning on Manifolds, Meshes, and Graphs},\n",
+    "      author = {Peter Mostowsky and Vincent Dutordoir and Iskander Azangulov and Noémie Jaquier and Michael John Hutchinson and Aditya Ravuri and Leonel Rozo and Alexander Terenin and Viacheslav Borovitskiy},\n",
+    "      year = {2024},\n",
+    "      journal = {arXiv:2407.08086},\n",
+    "}\n",
+    "```\n",
+    "\n",
     "```\n",
     "@article{azangulov2023,\n",
     "    title={Stationary Kernels and Gaussian Processes on Lie Groups and their Homogeneous Spaces II: non-compact symmetric spaces},\n",