VLE/QCT-80/cumulative_number_of_bases #271
Workflow file for this run
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| name: Tests | |
| on: | |
| push | |
| jobs: | |
| Formatting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout with submodules | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 0 | |
| - name: Formatting | |
| uses: github/super-linter@v5 | |
| env: | |
| VALIDATE_ALL_CODEBASE: true | |
| DEFAULT_BRANCH: main | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| VALIDATE_SNAKEMAKE_SNAKEFMT: true | |
| VALIDATE_PYTHON_PYLINT: true | |
| Linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Lint workflow | |
| uses: ezherman/snakemake-github-action@snakemake-8.20.5 | |
| with: | |
| directory: test | |
| snakefile: workflow/Snakefile | |
| args: "--configfile test/config/config.yaml --lint" |