Skip to content

Conversation

kltm
Copy link
Member

@kltm kltm commented Apr 9, 2020

Still needing to wait on #1431 (comment) for the moment.

Would like a check on these fields:

   entity_type: rna
   species_code: Scov2
   taxa:
    - NCBITaxon:694009

@cmungall

@cmungall
Copy link
Member

Entity type should be protein (Yes it is an rna virus, but the entries are proteins. I'm not sure it matters as this field doesn't seem to be used anywhere?)

aside: The entity_type field seems to be undocumented. we really need to use something standard like json-schema for the metadata schemas.

I chose Scov2 arbitrarily as the 'species code'. I don't know if uniprot have assigned an official one yet but I think 'Sars2' may be better -- not sure this matters either.

@kltm
Copy link
Member Author

kltm commented Apr 10, 2020

The last iteration appears to have been SARS-CoV; I haven't been able to find something more up to date.

@kltm
Copy link
Member Author

kltm commented Apr 10, 2020

Actually this may be the right one:
https://www.uniprot.org/docs/speclist

CVHSA V  694009: N=Human SARS coronavirus
                 C=SARS-CoV

@kltm
Copy link
Member Author

kltm commented Apr 10, 2020

NM: SARS-CoV-2...I'm still having trouble finding a taxon ID. I'll try again later.

@kltm
Copy link
Member Author

kltm commented Apr 10, 2020

Corrections to species and entity metadata
@kltm
Copy link
Member Author

kltm commented Apr 10, 2020

Now waiting on clearing: #1431 (comment)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants