Merge pull request #29207 from geneontology/issue-29202

obsoleted terms fixes #29205

src/ontology/go-edit.obo

@@ -262151,13 +262151,12 @@ creation_date: 2014-09-18T13:34:27Z
 
 [Term]
 id: GO:0044869
-name: negative regulation by host of viral exo-alpha-sialidase activity
+name: obsolete negative regulation by host of viral exo-alpha-sialidase activity
 namespace: biological_process
-def: "The process in which a host organism decreases viral exo-alpha-sialidase activity, the catalysis of the hydrolysis of peptide bonds in a protein." [GOC:jl]
-is_a: GO:0044866 ! modulation by host of viral exo-alpha-sialidase activity
-is_a: GO:0052403 ! negative regulation by host of symbiont catalytic activity
-intersection_of: GO:0052422 ! modulation by host of symbiont catalytic activity
-intersection_of: negatively_regulates GO:0004308 ! exo-alpha-sialidase activity
+def: "OBSOLETE. The process in which a host organism decreases viral exo-alpha-sialidase activity, the catalysis of the hydrolysis of peptide bonds in a protein." [GOC:jl]
+comment: This term was obsoleted because it represents a molecular function.
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29205" xsd:anyURI
+is_obsolete: true
 created_by: jl
 creation_date: 2014-09-18T14:13:51Z
 
@@ -279679,6 +279678,7 @@ name: blocking of symbiont entry into host cell
 namespace: biological_process
 def: "A process in which a host inhibits or disrupts the entry of a symbiont into a host cell." [PMID:23544079]
 synonym: "negative regulation of symbiont entry into host cell" RELATED []
+synonym: "negative regulation of viral entry into host cell" NARROW []
 synonym: "negative regulation of viral penetration into host cell" EXACT []
 synonym: "prevention of symbiont entry into host cell" EXACT []
 is_a: GO:0045087 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/geneontology/go-ontology/issues/13926"} ! innate immune response
@@ -334738,10 +334738,11 @@ is_obsolete: true
 
 [Term]
 id: GO:0052403
-name: negative regulation by host of symbiont catalytic activity
+name: obsolete negative regulation by host of symbiont catalytic activity
 namespace: biological_process
 alt_id: GO:0052405
-def: "Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont enzyme activity. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction." [GOC:mtg_pamgo_17jul06]
+def: "OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont enzyme activity. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction." [GOC:mtg_pamgo_17jul06]
+comment: This term was obsoleted because it represents a molecular function.
 synonym: "down regulation by host of symbiont enzyme activity" EXACT []
 synonym: "down regulation by host of symbiont protein function" BROAD []
 synonym: "down-regulation by host of symbiont enzyme activity" EXACT []
@@ -334754,8 +334755,8 @@ synonym: "inhibition of symbiont enzyme activity" EXACT []
 synonym: "inhibition of symbiont protein function" BROAD []
 synonym: "negative regulation by host of symbiont enzyme activity" EXACT []
 synonym: "negative regulation by host of symbiont molecular function" BROAD []
-intersection_of: GO:0052422 ! modulation by host of symbiont catalytic activity
-intersection_of: negatively_regulates GO:0003824 ! catalytic activity
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29205" xsd:anyURI
+is_obsolete: true
 
 [Term]
 id: GO:0052404
@@ -334914,13 +334915,15 @@ is_obsolete: true
 
 [Term]
 id: GO:0052422
-name: modulation by host of symbiont catalytic activity
+name: obsolete modulation by host of symbiont catalytic activity
 namespace: biological_process
 alt_id: GO:0052428
-def: "The process in which a host organism effects a change in the enzyme activity of its symbiont organism." [GOC:mtg_pamgo_17jul06, GOC:tb]
+def: "OBSOLETE. The process in which a host organism effects a change in the enzyme activity of its symbiont organism." [GOC:mtg_pamgo_17jul06, GOC:tb]
+comment: This term was obsoleted because it represents a molecular function.
 synonym: "modulation by host of symbiont enzyme activity" EXACT [GOC:tb]
 synonym: "modulation by host of symbiont molecular function" BROAD []
-is_a: GO:0051851 ! modulation by host of symbiont process
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29205" xsd:anyURI
+is_obsolete: true
 
 [Term]
 id: GO:0052424
@@ -584611,13 +584614,13 @@ creation_date: 2016-06-21T11:56:10Z
 
 [Term]
 id: GO:1990969
-name: modulation by host of viral RNA-binding transcription factor activity
+name: obsolete modulation by host of viral RNA-binding transcription factor activity
 namespace: biological_process
-def: "A process in which a host organism modulates the frequency, rate or extent of the activity of a viral RNA-binding transcription factor." [GOC:bf, GOC:PARL, PMID:25116364]
+def: "OBSOLETE. A process in which a host organism modulates the frequency, rate or extent of the activity of a viral RNA-binding transcription factor." [GOC:bf, GOC:PARL, PMID:25116364]
+comment: This term was obsoleted because it represents a molecular function.
 synonym: "modulation by host of viral Tat activity" NARROW [PMID:25116364]
-is_a: GO:0043921 ! modulation by host of viral transcription
-intersection_of: GO:0052422 ! modulation by host of symbiont catalytic activity
-intersection_of: regulates GO:0001070 ! RNA-binding transcription regulator activity
+property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29205" xsd:anyURI
+is_obsolete: true
 created_by: bf
 creation_date: 2016-06-21T12:12:31Z