impute

Naive imputation

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Naive imputation is implemented for data analysis. The missing locus is simply filled by the simulated genotypes, which is based on the allele frequency estimated from the available genotypes at the locus.

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Options

--bfile

Specify the original data in plink format.

--inbred

If the data is inbred lines, this option should be switched on.

--seed

Specify the random seed for imputation. By default it is 2012.

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Examples

gear impute --bfile dat --out dat_impute
gear impute --bfile inbred --inbred --out inbred_imput