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Update pyEnsemblRest #20

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merged 11 commits into from
Nov 22, 2024
Merged

Update pyEnsemblRest #20

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2fbc952
Drop support for Python 2. Various code improvements. Add new functio…
gawbul Nov 20, 2024
e288b53
Refactor fixes and more tests.
gawbul Nov 21, 2024
231f6d6
More tests and fixes.
gawbul Nov 21, 2024
307325f
Fix test
gawbul Nov 21, 2024
41a209d
Fix mypy error.
gawbul Nov 22, 2024
a219b06
Add pre-commit checks to CI. Update dependencies.
gawbul Nov 22, 2024
5e7ca2b
Update GHA for push_tag.
gawbul Nov 22, 2024
0a587da
Update TODO file.
gawbul Nov 22, 2024
6d9a3fb
Fix typo.
gawbul Nov 22, 2024
d0f6dca
Only run for changes to python files.
gawbul Nov 22, 2024
b334175
Update code quality badge in README.
gawbul Nov 22, 2024
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Fix test
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@gawbul
gawbul committed Nov 21, 2024
commit 307325f0a7e5405935783dd722e50167de1b3400
6 changes: 3 additions & 3 deletions tests/test_ensemblrest.py
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Expand Up @@ -393,12 +393,12 @@ def test_SomethingBadPOST(self) -> None:
"""Deal with the {"error":"something bad has happened"} message using a POST method"""

curl_cmd = (
"""curl 'https://rest.ensembl.org/archive/id' -H 'Content-type:application/json' """
"""-H 'Accept:application/json' -X POST -d '{ "id" : ["ENSG00000157764", "ENSG00000248378"] }'"""
"""curl 'https://rest.ensembl.org/lookup/id' -H 'Content-type:application/json' """
"""-H 'Accept:application/json' -X POST -d '{ "ids" : ["ENSG00000157764", "ENSG00000248378" ] }'"""
)

# execute EnsemblRest function
self.EnsEMBL.getArchiveByMultipleIds(id=["ENSG00000157764", "ENSG00000248378"])
self.EnsEMBL.getLookupByMultipleIds(ids=["ENSG00000157764", "ENSG00000248378"])

# retrieve last_reponse
last_response = self.EnsEMBL.last_response
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