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Adding: Samtools coverage, Clair3 and Kraken tools extract kraken reads and Updating: Fastp #768

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Adding: Samtools coverage, Clair3 and Kraken tools extract kraken reads and Updating: Fastp #768

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0022671
adding missing tools which are on European server but not on the main…
EngyNasr Jun 19, 2024
6707f73
updating fastp
EngyNasr Jun 19, 2024
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5 changes: 5 additions & 0 deletions usegalaxy.org/fasta_fastq.yml.lock
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Expand Up @@ -42,7 +42,12 @@ tools:
owner: iuc
revisions:
- 1d8fe9bc4cb0
- 3e2551a37201
- 415fd81b85d3
- 65b93b623c77
- 6c2351178f8d
- 988729b728f0
- a935cbdf1c0e
- c59d48774d03
- dbf9c561ef29
tool_panel_section_id: fasta_fastq
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2 changes: 2 additions & 0 deletions usegalaxy.org/metagenomic_analysis.yml
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Original file line number Diff line number Diff line change
@@ -1,5 +1,7 @@
tool_panel_section_label: Metagenomic Analysis
tools:
- name: krakentools_extract_kraken_reads
owner: iuc
- name: kraken2
owner: iuc
- name: diamond
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6 changes: 6 additions & 0 deletions usegalaxy.org/metagenomic_analysis.yml.lock
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Expand Up @@ -3,6 +3,12 @@ install_resolver_dependencies: false
install_tool_dependencies: false
tool_panel_section_label: Metagenomic Analysis
tools:
- name: krakentools_extract_kraken_reads
owner: iuc
revisions:
- f329328da134
tool_panel_section_id: metagenomic_analysis
tool_panel_section_label: Metagenomic Analysis
- name: kraken2
owner: iuc
revisions:
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3 changes: 3 additions & 0 deletions usegalaxy.org/sam_bam.yml
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Original file line number Diff line number Diff line change
@@ -1,5 +1,8 @@
tool_panel_section_label: SAM/BAM
tools:

- name: samtools_coverage
owner: iuc
- name: samtools_sort
owner: devteam
- name: samtools_mpileup
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6 changes: 6 additions & 0 deletions usegalaxy.org/sam_bam.yml.lock
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Expand Up @@ -3,6 +3,12 @@ install_resolver_dependencies: false
install_tool_dependencies: false
tool_panel_section_label: SAM/BAM
tools:
- name: samtools_coverage
owner: iuc
revisions:
- c4ff13d2aab3
tool_panel_section_id: sam_bam
tool_panel_section_label: SAM/BAM
- name: samtools_sort
owner: devteam
revisions:
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2 changes: 2 additions & 0 deletions usegalaxy.org/variant_calling.yml
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@@ -1,5 +1,7 @@
tool_panel_section_label: Variant Calling
tools:
- name: clair3
owner: iuc
- name: snpfreqplot
owner: iuc
- name: varscan_version_2
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6 changes: 6 additions & 0 deletions usegalaxy.org/variant_calling.yml.lock
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Expand Up @@ -3,6 +3,12 @@ install_resolver_dependencies: false
install_tool_dependencies: false
tool_panel_section_label: Variant Calling
tools:
- name: clair3
owner: iuc
revisions:
- 63e02ef6e153
tool_panel_section_id: variant_calling
tool_panel_section_label: Variant Calling
- name: snpfreqplot
owner: iuc
revisions:
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