remove subworkflows

galaxyproject · Oct 18, 2024 · 082c57a · 082c57a
1 parent 3115d21
commit 082c57a
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Showing 2 changed files with 96 additions and 1,850 deletions.
diff --git a/workflows/transcriptomics/rnaseq-pe/rnaseq-pe-tests.yml b/workflows/transcriptomics/rnaseq-pe/rnaseq-pe-tests.yml
@@ -61,13 +61,6 @@
     Compute StringTie FPKM?: true
     DEseq2 batch factors: null
   outputs:
-    MultiQC stats:
-      asserts:
-        has_text_matching:
-            expression: "GSM461177\t0.04[0-9]*\t80.94[0-9]*\t0.61[0-9]*\t0.05[0-9]*\t0.04[0-9]*\t99.32[0-9]*\t0.04[0-9]*\t95.98\t0.00[0-9]*\t1.86[0-9]*\t39.93[0-9]*\t43.0\t36.44[0-9]*\t37\t10.0\t0.11[0-9]*"
-            expression: "GSM461178\t0.03[0-9]*\t81.76[0-9]*\t1.23[0-9]*\t0.04[0-9]*\t0.04[0-9]*\t98.44\t0.04[0-9]*\t95.31\t0.00[0-9]*\t15.03[0-9]*\t29.82[0-9]*\t44.0\t34.37[0-9]*\t37\t10.0\t0.09[0-9]*"
-            expression: "GSM461180\t0.03[0-9]*\t81.41[0-9]*\t1.64[0-9]*\t0.04[0-9]*\t0.04[0-9]*\t97.94\t0.04[0-9]*\t94.84\t0.00[0-9]*\t13.51[0-9]*\t28.13[0-9]*\t44.0\t34.64[0-9]*\t37\t10.0\t0.09[0-9]*"
-            expression: "GSM461181\t0.04[0-9]*\t82.12[0-9]*\t0.71[0-9]*\t0.04[0-9]*\t0.04[0-9]*\t99.13\t0.04[0-9]*\t96.24\t0.00[0-9]*\t2.90[0-9]*\t37.93[0-9]*\t44.0\t36.06[0-9]*\t37\t10.0\t0.10[0-9]*"
     Differential Expression Analysis using DESeq2:
       asserts:
         has_text_matching:
@@ -95,24 +88,6 @@
           asserts:
             has_text:
               text: "FBgn0017545\t5943"
-    Coverage of Unstranded library:
-      element_tests:
-        GSM461177:
-          has_size:
-            value: 445281
-            delta: 20000
-        GSM461178:
-          has_size:
-            value: 406443
-            delta: 20000
-        GSM461180:
-          has_size:
-            value: 423518
-            delta: 20000
-        GSM461181:
-          has_size:
-            value: 455334
-            delta: 20000
     Mapped Reads:
       element_tests:
         GSM461177:
@@ -166,38 +141,4 @@
         GSM461181:
           asserts:
             has_text:
-              text: "Assigned\t44734"
-    Coverage of Stranded libray:
-      element_tests:
-        GSM461177_forward:
-          has_size:
-            value: 313382
-            delta: 15000
-        GSM461178_forward:
-          has_size:
-            value: 285608
-            delta: 15000
-        GSM461180_forward:
-          has_size:
-            value: 295650
-            delta: 15000
-        GSM461181_forward:
-          has_size:
-            value: 3075214
-            delta: 15000
-        GSM461177_reverse:
-          has_size:
-            value: 313241
-            delta: 15000
-        GSM461178_reverse:
-          has_size:
-            value: 281153
-            delta: 15000
-        GSM461180_reverse:
-          has_size:
-            value: 292239
-            delta: 15000
-        GSM461181_reverse:
-          has_size:
-            value: 322248
-            delta: 15000
+              text: "Assigned\t44734"