Add kraken2 datatype#22455
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pvanheus wants to merge 6 commits into
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mvdbeek
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Apr 15, 2026
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| class Kraken2DatabaseArchive(CompressedArchive): |
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I think there was some discussion about this already, but i think it'd be better to build an auto compressed version of Kraken2DatabaseDirectory instead ? We could also build an abstraction that allows just declaring the required files in the datatype config so we don't need code changes for this.
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Some guidance on how to do this would be much appreciated!
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The update in galaxyproject/tools-iuc#7257 for the kraken2 tool allows it to use a custom database passed as a parameter. Currently this uses the Directory datatype. This datatype allows a more specific input type to be specified and also allows a compressed archive to be uploaded and unpacked to the kraken2 database datatype.
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